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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 3naz:C
    (3.0)    		 BS01 >3naz:E (identical to 8a05:X, 7cgo:GB, 3cs0:B, 7e81:GB, 6f2r:1, 6f2r:2, 6f2r:3, 7fi3:E, 7fi3:F, 7fi3:G, 7fi3:H, 5fjy:D, 5fjy:E, 5hm9:C, 5hma:C, 6i2p:C, 8kic:H, 3mh7:B, 3mh7:C, 6mpv:D, 5njf:E, 5njf:F, 7od7:E, 3ou0:B, 8p0y:C, 3qo6:F, 7qrf:C, 1rjl:D, 3rsz:F, 3stj:M, 3stj:N, 3stj:O, 3stj:P, 3stj:Q, 3stj:R, 3stj:S, 3stj:T, 3stj:U, 3stj:V, 3stj:W, 3stj:X, 6uj0:D, 7zzz:X)
    AAAAA
    		 2.4.1.11 GO:0004373 ... P27472 20876143
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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