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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    DNA
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 8cxv:A
    (2.26)
    BS02 >8cxv:E (identical to 8cxs:E, 8cxs:G, 8cxs:I, 8cxt:G, 8cxt:I, 8cxu:E, 8cxu:G, 8cxu:I, 8cxv:G, 8cxv:I, 8cxw:E, 8cxw:G, 8cxw:I, 8cxx:E, 8cxx:G, 8cxx:I, 8cxy:E, 8cxy:G, 8cxy:I, 8cxz:E, 8cxz:G, 8cxz:I, 8cy0:E, 8cy0:G, 8cy0:I, 8cy1:E, 8cy1:G, 8cy1:I, 8cy2:E, 8cy2:G, 8cy2:I, 8cy3:E, 8cy3:G, 8cy3:I, 8cy4:E, 8cy4:G, 8cy4:I, 8cy5:E, 8cy5:G, 8cy5:I, 8fs1:E, 8fs1:G, 8fs1:I, 8fs2:E, 8fs2:G, 8fs2:I, 7lni:E, 7lni:G, 7lni:I, 7lnj:G, 7lnj:I, 7lt5:G, 7lt5:I, 7rfk:G, 7rfk:I, 7rfl:G, 7rfl:I, 7rfm:G, 7rfm:I, 7rfn:E, 7rfn:G, 7rfn:I, 8vpg:G, 8vpg:I, 8vph:G, 8vph:I, 8vpi:G, 8vpi:I)
    atgggactttttga
    2.1.1.72 GO:0003676 ... Q183J3 36581322

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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