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BioLiP
Download all results in tab-seperated text for 4 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    DNA
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 5btl:A
    (2.5)
    BS01 >5btl:E (identical to 5bs8:E, 5bs8:H, 5bta:E, 5bta:H, 5btc:E, 5btc:H, 5btd:E, 5btd:H, 5btf:E, 5btf:H, 5btg:E, 5btg:H, 5bti:E, 5bti:H, 5btl:H, 5btn:E, 5btn:H)
    tcatgaatgactatgcacgta
    5.6.2.2 GO:0003677 ... P9WG47 26792525
    2 5btl:B
    (2.5)
    BS01 >5btl:E (identical to 5bs8:E, 5bs8:H, 5bta:E, 5bta:H, 5btc:E, 5btc:H, 5btd:E, 5btd:H, 5btf:E, 5btf:H, 5btg:E, 5btg:H, 5bti:E, 5bti:H, 5btl:H, 5btn:E, 5btn:H)
    tcatgaatgactatgcacgta
    5.6.2.2 GO:0003677 ... P9WG45 26792525
    3 5btl:C
    (2.5)
    BS01 >5btl:E (identical to 5bs8:E, 5bs8:H, 5bta:E, 5bta:H, 5btc:E, 5btc:H, 5btd:E, 5btd:H, 5btf:E, 5btf:H, 5btg:E, 5btg:H, 5bti:E, 5bti:H, 5btl:H, 5btn:E, 5btn:H)
    tcatgaatgactatgcacgta
    5.6.2.2 GO:0003677 ... P9WG47 26792525
    4 5btl:D
    (2.5)
    BS01 >5btl:E (identical to 5bs8:E, 5bs8:H, 5bta:E, 5bta:H, 5btc:E, 5btc:H, 5btd:E, 5btd:H, 5btf:E, 5btf:H, 5btg:E, 5btg:H, 5bti:E, 5bti:H, 5btl:H, 5btn:E, 5btn:H)
    tcatgaatgactatgcacgta
    5.6.2.2 GO:0003677 ... P9WG45 26792525

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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