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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8kde:A (2.6) BS01 CLA N/A GO:0005506 ... P07753 38890314
    2 8kde:A (2.6) BS02 PHO N/A GO:0005506 ... P07753 38890314
    3 8kde:A (2.6) BS03 PHO N/A GO:0005506 ... P07753 38890314
    4 8kde:D (2.6) BS01 CLA N/A GO:0005506 ... P06007 38890314
    5 8kde:D (2.6) BS02 CLA N/A GO:0005506 ... P06007 38890314
    6 8kde:D (2.6) BS03 CLA N/A GO:0005506 ... P06007 38890314
    7 8kde:D (2.6) BS04 CLA N/A GO:0005506 ... P06007 38890314
    8 8kde:D (2.6) BS05 PHO N/A GO:0005506 ... P06007 38890314
    9 8kde:D (2.6) BS06 PHO N/A GO:0005506 ... P06007 38890314
    10 8kde:D (2.6) BS07 VTQ N/A GO:0005506 ... P06007 38890314
    11 8kde:D (2.6) BS08 BCT N/A GO:0005506 ... P06007 38890314
    12 8kde:D (2.6) BS09 FE2 N/A GO:0005506 ... P06007 38890314
    13 8kde:D (2.6) BS10 CLA N/A GO:0005506 ... P06007 38890314
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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