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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8xlp:A (2.57) BS11 CLA N/A GO:0005506 ... A6MVT2 N/A
    2 8xlp:A (2.57) BS12 PHO N/A GO:0005506 ... A6MVT2 N/A
    3 8xlp:A (2.57) BS13 CLA N/A GO:0005506 ... A6MVT2 N/A
    4 8xlp:D (2.57) BS01 FE2 N/A GO:0005506 ... A6MVR3 N/A
    5 8xlp:D (2.57) BS02 CLA N/A GO:0005506 ... A6MVR3 N/A
    6 8xlp:D (2.57) BS03 PHO N/A GO:0005506 ... A6MVR3 N/A
    7 8xlp:D (2.57) BS04 BCT N/A GO:0005506 ... A6MVR3 N/A
    8 8xlp:D (2.57) BS05 CLA N/A GO:0005506 ... A6MVR3 N/A
    9 8xlp:D (2.57) BS06 CLA N/A GO:0005506 ... A6MVR3 N/A
    10 8xlp:D (2.57) BS07 PHO N/A GO:0005506 ... A6MVR3 N/A
    11 8xlp:D (2.57) BS08 CLA N/A GO:0005506 ... A6MVR3 N/A
    12 8xlp:D (2.57) BS09 CLA N/A GO:0005506 ... A6MVR3 N/A
    13 8xlp:D (2.57) BS10 WVN N/A GO:0005506 ... A6MVR3 N/A
    14 8xlp:F (2.57) BS01 WVN N/A GO:0005506 ... A6MVV4 N/A
    15 8xlp:X (2.57) BS01 CLA N/A GO:0009507 ... A6MVU5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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