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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    Peptide
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 8b58:B
    (1.1)
    BS01 >8b58:D (identical to 8b58:C, 3bo7:E, 3bo7:F, 3bo7:G, 3bo7:H, 1c5f:B, 1c5f:D, 1c5f:F, 1c5f:H, 1c5f:J, 1c5f:L, 1c5f:N, 1c5f:P, 1cwa:C, 1cwb:C, 1cwl:C, 1cyn:C, 3cys:B, 4dgc:F, 4dgc:G, 4dgc:H, 4dgc:I, 4dgc:J, 3eov:C, 3eov:D, 2esl:I, 2esl:J, 2esl:K, 2esl:L, 2esl:M, 2esl:N, 1ikf:C, 8kc9:E, 1m63:D, 1m63:H, 1mf8:D, 1mik:B, 3odi:B, 3odi:D, 3odi:F, 3odi:H, 3odi:J, 3odi:L, 3odi:N, 3odi:P, 3odi:R, 3odi:T, 3odl:B, 3odl:D, 3odl:F, 3odl:H, 3odl:J, 3odl:L, 3odl:N, 3odl:P, 3odl:R, 3odl:T, 2oju:C, 2oju:D, 7pcj:B, 7pcj:E, 3pmp:C, 3pmp:D, 2poy:T, 2poy:U, 2poy:V, 2rma:B, 2rma:D, 2rma:F, 2rma:H, 2rma:J, 2rma:L, 2rma:N, 2rma:P, 2rma:R, 2rma:T, 2rmb:B, 2rmb:D, 2rmb:F, 2rmb:H, 2rmb:J, 2rmb:L, 2rmb:N, 2rmb:P, 2rmb:R, 2rmb:T, 2rmc:B, 2rmc:D, 2rmc:F, 2rmc:H, 1xq7:D, 1xq7:E, 1xq7:F, 4yv9:E, 4yv9:F, 4yv9:G, 4yv9:H, 2z6w:M, 2z6w:N)
    ALLVTPGLVLA
    5.2.1.8 GO:0000413 ... B9PS61 36653744

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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