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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5d1d:A
    (2.011)    		 BS02 >5d1d:D (identical to 5d1c:C, 5d1c:D, 5d1d:C, 5dc6:C, 5dc6:D, 5dc7:C, 5dc7:D, 5dc8:C, 5dc8:D, 4fz3:B, 7jvv:C, 7jvv:D, 2v5w:I, 2v5w:L)
    RHKKt
    		 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 26463496
    2 5d1d:B
    (2.011)    		 BS02 >5d1d:D (identical to 5d1c:C, 5d1c:D, 5d1d:C, 5dc6:C, 5dc6:D, 5dc7:C, 5dc7:D, 5dc8:C, 5dc8:D, 4fz3:B, 7jvv:C, 7jvv:D, 2v5w:I, 2v5w:L)
    RHKKt
    		 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 26463496
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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