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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 3omq:B
    (1.97)    		 BS01 >3omq:D (identical to 7bns:B2, 7bq1:B, 7bq2:B, 7bq4:B, 8ck5:B, 8ckc:B, 5e7v:B, 9eyr:B, 9fbf:B, 6fod:B, 4g1y:B, 4g1z:B, 4g20:B, 4g2h:B, 2hbh:B, 2hc4:B, 2hcd:B, 8hum:B, 6l96:C, 5mx7:B1, 5nky:B, 5nma:B, 3oll:C, 3oll:D, 3ols:C, 3ols:D, 3omo:C, 3omo:D, 3omp:C, 3omp:D, 3omq:C, 5ow9:B, 7oxz:B, 7oy4:B, 8p9w:B, 7qpi:U, 4ruj:B, 4rup:B, 3s9s:B, 6t2m:B, 7wgq:B, 7zfg:B, 7zfx:B)
    RHKILHRLLQ
    		 ? GO:0003677 ... Q92731 21381753
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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