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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 3jv2:B
    (2.5)    		 BS01 >3jv2:D (identical to 6avz:E, 6byz:D, 6byz:E, 4c2c:B, 4c2f:B, 4d2d:B, 3e4a:F, 3e4a:G, 3flo:I, 3flo:J, 3flo:K, 3flo:L, 6hwn:H, 6hwn:I, 6hwn:J, 6hwn:K, 6hwn:L, 6hwn:M, 6hwn:N, 4iel:C, 3jv2:C, 4pes:C, 4pes:D, 7pub:UK, 3qo6:G, 6r0q:F, 6r0q:E, 6r18:D, 1rqf:P, 3tcf:I, 3tcf:J, 3tcf:K, 3tcf:L, 3tcf:M, 3tcf:N, 3tcf:O, 3tcf:P, 4tpj:C, 4tpj:E, 3tuv:B, 6xov:C, 7xs0:B, 5y2d:B, 5yl7:B, 4ynn:Q, 4ynn:R, 4ynn:S, 4ynn:T, 4ynn:U, 4ynn:V, 2zl2:R)
    AAA
    		 7.4.2.8 GO:0005524 ... P28366 19850053
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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