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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 2vnf:A
    (1.76)    		 BS02 >2vnf:D (identical to 3ask:P, 7bqz:D, 7bqz:F, 7bqz:H, 7bu9:D, 7bu9:F, 7bu9:H, 5fb0:D, 5fb0:F, 3fdt:T, 4gng:B, 4gng:F, 4gy5:E, 6ie6:P, 6ie7:E, 6ie7:F, 6ieu:C, 5ix1:Q, 5ix2:P, 5ix2:Q, 2ke1:B, 7klr:B, 2mnz:B, 3o37:E, 3o37:F, 3o37:G, 3o37:H, 4psx:P, 2puy:E, 3ql9:C, 3qla:C, 3qla:F, 2rr4:B, 3u5n:C, 4u7t:F, 4u7t:G, 7yta:P, 7yta:R, 4z0r:D, 5zwx:P, 5zwx:Q)
    ARTKQTARKS
    		 ? N/A Q9UNL4 18381289
    2 2vnf:C
    (1.76)    		 BS01 >2vnf:D (identical to 3ask:P, 7bqz:D, 7bqz:F, 7bqz:H, 7bu9:D, 7bu9:F, 7bu9:H, 5fb0:D, 5fb0:F, 3fdt:T, 4gng:B, 4gng:F, 4gy5:E, 6ie6:P, 6ie7:E, 6ie7:F, 6ieu:C, 5ix1:Q, 5ix2:P, 5ix2:Q, 2ke1:B, 7klr:B, 2mnz:B, 3o37:E, 3o37:F, 3o37:G, 3o37:H, 4psx:P, 2puy:E, 3ql9:C, 3qla:C, 3qla:F, 2rr4:B, 3u5n:C, 4u7t:F, 4u7t:G, 7yta:P, 7yta:R, 4z0r:D, 5zwx:P, 5zwx:Q)
    ARTKQTARKS
    		 ? N/A Q9UNL4 18381289
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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