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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 2amq:A
    (2.3)    		 BS02 >2amq:D (identical to 2amq:C, 7bqy:C, 3d23:H, 3d23:F, 3d23:E, 3d23:G, 7d3c:C, 7d3c:E, 5eu8:B, 5gwy:D, 5gwy:E, 5gwz:D, 5gwz:E, 2hob:B, 3iwm:H, 3iwm:F, 3iwm:G, 3iwm:E, 6jij:D, 6jij:E, 6jij:F, 6lu7:C, 2q6f:D, 2q6f:C, 7wku:H, 7wku:I, 7wku:J, 7wku:K, 7wku:L, 7wku:M)
    gAVLa
    		 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0C6X7 16128623
    2 2amq:B
    (2.3)    		 BS01 >2amq:D (identical to 2amq:C, 7bqy:C, 3d23:H, 3d23:F, 3d23:E, 3d23:G, 7d3c:C, 7d3c:E, 5eu8:B, 5gwy:D, 5gwy:E, 5gwz:D, 5gwz:E, 2hob:B, 3iwm:H, 3iwm:F, 3iwm:G, 3iwm:E, 6jij:D, 6jij:E, 6jij:F, 6lu7:C, 2q6f:D, 2q6f:C, 7wku:H, 7wku:I, 7wku:J, 7wku:K, 7wku:L, 7wku:M)
    gAVLa
    		 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0C6X7 16128623
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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