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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    DNA
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 5vz9:A
    (1.65)
    BS03 >5vz9:D (identical to 6ak8:D, 6ak9:D, 6akh:D, 2bcq:D, 2bcr:D, 2bcs:D, 2bcu:D, 2bcv:D, 3c5f:D, 3c5f:E, 3c5g:D, 3c5g:E, 7co6:D, 7co8:D, 7co9:D, 7coa:D, 7cob:D, 7coc:D, 7cod:D, 5cwr:D, 5cwr:C, 5dkw:D, 5dkw:C, 4fo6:D, 2gws:D, 2gws:H, 2gws:L, 2gws:Q, 3hw8:D, 3hwt:D, 3hx0:D, 3hx0:I, 3hx0:N, 3hx0:S, 2ihm:D, 2ihm:E, 5iii:D, 5iij:D, 5iik:D, 5iil:D, 5iim:D, 5iin:D, 5iio:D, 5iio:H, 5iio:L, 5iio:P, 6ipd:D, 6ipe:D, 6ipf:D, 6ipg:D, 4k4g:D, 4k4g:H, 4k4g:L, 4k4g:P, 4k4h:D, 4k4h:H, 4k4h:L, 4k4h:P, 4k4i:D, 4k4i:H, 4k4i:L, 4k4i:P, 7kss:D, 7kst:D, 7ksu:D, 7ksv:D, 7ksw:D, 7ksx:D, 7ksy:D, 7ksz:D, 7kt0:D, 7kt1:D, 7kt2:D, 7kt3:D, 7kt4:D, 7kt5:D, 7kt6:D, 7kt7:D, 7kt8:D, 7kt9:D, 7kta:D, 7ktb:D, 7ktc:D, 7ktd:D, 7kte:D, 7ktf:D, 7ktg:D, 7kth:D, 7kti:D, 7ktj:D, 7ktk:D, 7ktl:D, 7ktm:D, 7ktn:D, 4lzg:D, 4m04:D, 4m0a:D, 7m07:D, 7m08:D, 7m09:D, 7m0a:D, 7m0b:D, 7m0c:D, 7m0d:H, 7m0d:L, 7m0e:H, 7m0e:L, 7m0e:P, 7m0e:U, 7m43:D, 7m44:D, 7m45:D, 7m46:D, 7m47:D, 7m48:D, 7m49:D, 7m4a:D, 7m4b:D, 7m4c:D, 7m4d:D, 7m4e:D, 7m4f:D, 7m4g:D, 7m4h:D, 7m4i:D, 7m4j:D, 7m4k:D, 7m4l:D, 3mda:D, 3mdc:D, 3mgh:D, 3mgh:G, 3mgi:D, 6p1m:D, 6p1n:D, 6p1o:D, 6p1p:D, 6p1q:D, 6p1r:D, 6p1s:D, 6p1t:D, 6p1u:D, 6p1v:D, 6p1w:D, 2pfn:D, 2pfo:D, 2pfp:D, 2pfq:D, 3pml:D, 3pml:G, 3pmn:D, 3pnc:D, 1rzt:D, 1rzt:H, 1rzt:L, 1rzt:P, 5twp:D, 5twq:D, 5twr:D, 5tws:D, 5txx:D, 5txz:D, 5tyb:D, 5tyc:D, 5tyd:D, 5tye:D, 5tyf:D, 5tyg:D, 5tyu:D, 5tyv:D, 5tyw:D, 5tyx:D, 5tyy:D, 5tyz:D, 8u0p:D, 7un7:D, 3upq:D, 3uq0:D, 3uq2:D, 6vez:D, 6vf0:D, 6vf1:D, 6vf2:D, 6vf3:D, 6vf4:D, 6vf5:D, 6vf6:D, 6vf7:D, 6vf8:D, 6vf9:D, 6vfa:D, 6vfb:D, 6vfc:D, 5vz7:D, 5vz8:D, 5vza:D, 5vzb:D, 5vzc:D, 5vzd:D, 5vze:D, 5vzf:D, 5vzg:D, 5vzh:D, 5vzi:D, 6wic:D, 6wid:D, 6wie:D, 4x5v:D, 4xa5:D, 1xsl:D, 1xsl:H, 1xsl:L, 1xsl:P, 1xsn:D, 1xsp:D, 4xus:D, 4ycx:D, 4yd1:D, 4yd2:D)
    gccg
    2.7.7.7 GO:0003677 ... Q9NP87 28911097

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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