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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    DNA
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 5j0q:A
    (2.0)
    BS03 >5j0q:D (identical to 6bel:D, 6bem:D, 5bol:D, 5bom:D, 1bpx:D, 1bpy:D, 1bpz:D, 5bpc:D, 6bte:D, 6btf:D, 3c2k:D, 3c2l:D, 3c2m:D, 6cly:D, 6cpq:D, 6cr3:D, 6cr4:D, 6cr5:D, 6cr6:D, 6cr7:D, 6cr8:D, 6cr9:D, 6crb:D, 6crc:D, 6crh:D, 6cti:D, 6ctj:D, 6ctk:D, 6ctl:D, 6ctm:D, 6ctn:D, 6cto:D, 6ctp:D, 6ctq:D, 6ctr:D, 6ctt:D, 6ctu:D, 6ctv:D, 6ctw:D, 6ctx:D, 6cu9:D, 6cua:D, 6cub:D, 5db6:D, 5db7:D, 5db8:D, 5db9:D, 5dba:D, 5dbb:D, 5dbc:D, 6dia:D, 6dic:D, 4do9:D, 4doa:D, 4dob:D, 4doc:D, 6e3r:D, 6e3v:D, 6e3w:D, 6e3x:D, 5eoz:D, 4f5n:D, 4f5o:D, 4f5p:D, 4f5q:D, 4f5r:D, 4f5r:C, 2fmp:D, 2fmq:D, 2fms:D, 6g2q:D, 3gdx:D, 4gxi:D, 4gxj:D, 4gxk:D, 5hhh:D, 5hhi:D, 2i9g:D, 2iso:D, 2isp:D, 3isb:D, 3isc:D, 3isd:D, 5j0o:D, 5j0p:D, 5j0r:D, 5j0s:D, 5j0t:D, 5j0u:D, 5j0w:D, 5j0x:D, 5j0y:D, 5j29:D, 5j2a:D, 5j2b:D, 5j2c:D, 5j2d:D, 5j2e:D, 5j2f:D, 5j2g:D, 5j2h:D, 5j2i:D, 5j2j:D, 5j2k:D, 3jpn:D, 3jpo:D, 3jpp:D, 3jpq:D, 3jpr:D, 3jps:D, 3jpt:D, 4jwm:D, 4jwn:D, 7k96:D, 7k97:D, 4kld:D, 4kle:D, 4klf:D, 4klg:D, 4klh:D, 4kli:D, 4klj:D, 4kll:D, 4klm:D, 4klo:D, 4klq:D, 4kls:D, 4klt:D, 4klu:D, 3lk9:D, 4lvs:D, 4m2y:D, 4m47:D, 4m9g:D, 4m9h:D, 4m9j:D, 4m9l:D, 4m9n:D, 3mby:D, 4mf2:D, 4mf8:D, 4mfa:D, 4mfc:D, 4mff:D, 1mq2:D, 1mq3:D, 6mr7:D, 6mr8:D, 7mz0:D, 7mz1:D, 7mz2:D, 7mz3:D, 7mz4:D, 7mz8:D, 6n2r:D, 6n2s:D, 6n2t:D, 6nkr:D, 6nks:D, 6nkt:D, 4nlk:D, 4nln:D, 4nlz:D, 4nm1:D, 4nm2:D, 4nxz:D, 4ny8:D, 4o5c:D, 4o5e:D, 4o5k:D, 4o9m:D, 4p2h:D, 4pgq:D, 4pgx:D, 4pgy:D, 4ph5:D, 4pha:D, 4phd:D, 4phe:D, 4php:D, 6ph5:D, 6ph6:D, 6pkz:D, 4ppx:D, 2pxi:D, 4r63:D, 4r64:D, 4r65:D, 4r66:D, 7rbe:D, 7rbf:D, 7rbg:D, 7rbh:D, 7rbi:D, 7rbj:D, 7rbk:D, 7rbl:D, 7rbm:D, 7rbn:D, 7rbo:D, 3rh4:D, 3rh5:D, 3rh6:D, 3rje:D, 3rjf:D, 3rjg:D, 3rjh:D, 3rji:D, 3rjj:D, 3rjk:D, 4rpx:D, 4rpy:D, 4rpz:D, 4rq0:D, 4rq1:D, 4rq2:D, 4rq3:D, 4rq4:D, 4rq5:D, 4rq6:D, 4rq7:D, 4rq8:D, 4rt2:D, 4rt3:D, 7s9j:D, 7s9k:D, 7s9l:D, 7s9m:D, 7s9n:D, 7s9o:D, 7s9p:D, 7s9q:D, 5tb8:D, 5tb9:D, 5tba:D, 5tbb:D, 5tbc:D, 3tfr:D, 3tfs:D, 1tv9:D, 1tva:D, 5tzv:D, 5u2r:D, 5u2s:D, 5u2t:D, 5u8g:D, 5u8h:D, 5u8i:D, 5u9h:D, 4uaw:D, 4uay:D, 4uaz:D, 4ub1:D, 4ub2:D, 4ub3:D, 4ub4:D, 4ub5:D, 4ubb:D, 4ubc:D, 5ugn:D, 5ugo:D, 5ugp:D, 6uok:E, 6uok:D, 6uol:D, 6uom:D, 5v1f:D, 5v1g:D, 5v1h:D, 5v1i:D, 5v1j:D, 5v1n:D, 5v1o:D, 5v1p:D, 5v1r:D, 5vez:D, 8vf8:D, 8vf9:D, 8vfa:D, 8vfb:D, 8vfc:D, 8vfd:D, 8vfe:D, 8vff:D, 8vfg:D, 8vfh:D, 8vfi:D, 8vfj:D, 5vrw:D, 5vrx:D, 5vry:D, 5vrz:D, 5vs0:D, 5vs1:D, 5vs2:D, 5vs3:D, 5vs4:D, 6w2m:D, 5wnx:D, 5wny:D, 5wnz:D, 5wo0:D, 4ymm:D, 4ymn:D, 4ymo:D, 4yn4:D, 4z6c:D, 4z6d:D, 4z6e:D, 4z6f:D, 1zjm:D, 1zjn:D)
    gtcgg
    2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 27642161

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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