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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 4nie:A
    (2.01)    		 BS01 >4nie:C (identical to 6a5z:I, 7bnu:B2, 7bo6:B, 8c1l:D, 5dsh:B, 6fo7:B, 6fo8:B, 6fo9:B, 6fob:B, 8huq:B, 6ijr:B, 6jnr:C, 4jyi:F, 5kcc:D, 6l6k:B, 7pdt:V, 8pwd:B, 8pwf:B, 8pz8:B, 8pz9:B, 2qzo:C, 1rdt:B, 5uan:D, 1uhl:C, 7wqq:C, 1x7r:B, 5z12:F, 5z12:I, 4zn9:D)
    HKILHRLLQ
    		 ? GO:0003677 ... P51449 24900774
    2 4nie:B
    (2.01)    		 BS01 >4nie:C (identical to 6a5z:I, 7bnu:B2, 7bo6:B, 8c1l:D, 5dsh:B, 6fo7:B, 6fo8:B, 6fo9:B, 6fob:B, 8huq:B, 6ijr:B, 6jnr:C, 4jyi:F, 5kcc:D, 6l6k:B, 7pdt:V, 8pwd:B, 8pwf:B, 8pz8:B, 8pz9:B, 2qzo:C, 1rdt:B, 5uan:D, 1uhl:C, 7wqq:C, 1x7r:B, 5z12:F, 5z12:I, 4zn9:D)
    HKILHRLLQ
    		 ? GO:0003677 ... P51449 24900774
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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