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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 3vt8:A
    (2.1)    		 BS01 >3vt8:C (identical to 3afr:C, 5awj:C, 5awk:C, 5b41:C, 5b5b:C, 5b5b:F, 6jez:C, 2o4r:C, 1rjk:C, 1rk3:C, 1rkh:C, 3vt3:C, 3vt4:C, 3vt5:C, 3vt6:C, 3vt7:C, 3vt9:C, 3vtb:B, 3vtc:B, 3vtd:B, 3w5p:C, 3w5q:C, 3w5r:C, 3w5t:C, 3wt5:C, 3wt6:C, 3wt7:C, 3wtq:C, 5xpm:C, 5xpn:C, 2zla:C, 2zlc:C, 2zmh:C, 2zmi:C, 2zmj:C, 5zwe:C, 5zwf:C, 5zwh:C, 5zwi:C, 2zxm:C, 2zxn:C)
    KNHPMLMNLLK
    		 ? GO:0003677 ... P13053 23944708
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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