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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 3s5l:A
    (2.1)    		 BS01 >3s5l:C (identical to 4c56:F, 4c56:L, 1dlh:C, 1dlh:F, 1fyt:C, 2g9h:C, 1hxy:C, 2icw:C, 2icw:F, 1j8h:C, 1jwm:C, 1jws:C, 1jwu:C, 1kg0:D, 1lo5:C, 2oje:C, 2oje:G, 8pje:C, 8pje:F, 6r0e:CCC, 1r5i:C, 1r5i:G, 3s4s:C, 3s4s:F, 3s5l:F, 2xn9:F)
    PKYVKQNTLKLAT
    		 ? GO:0006955 ... P01903 21900604
    2 3s5l:B
    (2.1)    		 BS01 >3s5l:C (identical to 4c56:F, 4c56:L, 1dlh:C, 1dlh:F, 1fyt:C, 2g9h:C, 1hxy:C, 2icw:C, 2icw:F, 1j8h:C, 1jwm:C, 1jws:C, 1jwu:C, 1kg0:D, 1lo5:C, 2oje:C, 2oje:G, 8pje:C, 8pje:F, 6r0e:CCC, 1r5i:C, 1r5i:G, 3s4s:C, 3s4s:F, 3s5l:F, 2xn9:F)
    PKYVKQNTLKLAT
    		 ? GO:0006955 ... P01911 21900604
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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