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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 2h6q:A
    (1.87)    		 BS01 >2h6q:C (identical to 4c1q:C, 5c11:B, 3c6w:B, 8f8z:E, 2gfa:C, 2gfa:D, 2h6q:D, 6j2p:E, 4l58:B, 4l7x:U, 3lqi:S, 5lug:E, 4mzh:B, 4ouc:B, 2pvc:D, 2pvc:E, 2pvc:F, 4qbr:P, 4qbr:E, 4qbs:P, 3qlc:C, 3qlc:D, 3shb:B, 5t8r:E, 2uxn:E, 3v43:Q, 2v88:F, 2vpe:P, 2vpe:R, 2vpg:P, 2vpg:R, 7w6l:M, 5wle:C, 5wxg:P, 5wxh:D, 5wxh:P, 5xmy:P, 5xmy:D, 5y20:P, 6yih:D, 5yko:P, 5yvx:C, 5z8n:Q, 5z8n:R, 5z94:C, 5z94:D)
    ARTKQTA
    		 ? GO:0000122 ... P61964 16829959
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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