Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 3 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (resolution)
    Site
    #
    Peptide
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 1ao7:A
    (2.6)
    BS01 >1ao7:C (identical to 2av1:C, 2av1:F, 2av7:C, 2av7:F, 1bd2:C, 1duz:C, 1duz:F, 4e5x:C, 4e5x:F, 4ftv:C, 1hhk:C, 1hhk:F, 1im3:C, 1im3:G, 1im3:K, 1im3:O, 5iro:B, 5iro:F, 5iro:J, 5iro:N, 5iro:R, 5iro:V, 3ixa:C, 3ixa:F, 6uz1:C, 6uz1:H)
    LLFGYPVYV
    ? N/A P04439 8906788
    2 1ao7:D
    (2.6)
    BS01 >1ao7:C (identical to 2av1:C, 2av1:F, 2av7:C, 2av7:F, 1bd2:C, 1duz:C, 1duz:F, 4e5x:C, 4e5x:F, 4ftv:C, 1hhk:C, 1hhk:F, 1im3:C, 1im3:G, 1im3:K, 1im3:O, 5iro:B, 5iro:F, 5iro:J, 5iro:N, 5iro:R, 5iro:V, 3ixa:C, 3ixa:F, 6uz1:C, 6uz1:H)
    LLFGYPVYV
    ? GO:0002250 ... A0A075B6T6
    P01848
    8906788
    3 1ao7:E
    (2.6)
    BS01 >1ao7:C (identical to 2av1:C, 2av1:F, 2av7:C, 2av7:F, 1bd2:C, 1duz:C, 1duz:F, 4e5x:C, 4e5x:F, 4ftv:C, 1hhk:C, 1hhk:F, 1im3:C, 1im3:G, 1im3:K, 1im3:O, 5iro:B, 5iro:F, 5iro:J, 5iro:N, 5iro:R, 5iro:V, 3ixa:C, 3ixa:F, 6uz1:C, 6uz1:H)
    LLFGYPVYV
    ? N/A A0A0K0K1A5
    A0A5B9
    8906788

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218