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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 3s3m:A
    (2.49)    		 BS01 >3s3m:C (identical to 7adu:C, 7adv:C, 4bdy:C, 4bdz:C, 4be0:C, 4be1:C, 4be2:C, 4e7h:C, 4e7i:C, 4e7j:C, 4e7k:C, 4e7l:C, 5frm:C, 5frn:C, 5fro:C, 4ikf:C, 5mma:C, 5mmb:C, 5no1:C, 3os0:C, 3os1:C, 3os2:C, 3oy9:C, 3oya:C, 3oyb:C, 3oyc:C, 3oyd:C, 3oye:C, 3oyf:C, 3oyg:C, 3oyh:C, 3oyi:C, 3oyj:C, 3oyk:C, 3oyl:C, 3oym:C, 3oyn:C, 3s3n:C, 3s3o:C, 5uop:C, 5uoq:C, 4ztf:C, 4ztj:C)
    attgtcatggaatttcgca
    		 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... P14350 21719464
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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