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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6sv4:AA
    (3.3)    		 BS02 >6sv4:BS (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8k:3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0000470 ... P17076 32203490
    2 6sv4:AF
    (3.3)    		 BS02 >6sv4:BS (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8k:3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0000448 ... P49166 32203490
    3 6sv4:AH
    (3.3)    		 BS02 >6sv4:BS (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8k:3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0000027 ... P04456 32203490
    4 6sv4:AJ
    (3.3)    		 BS02 >6sv4:BS (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8k:3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0002181 ... Q12690 32203490
    5 6sv4:AK
    (3.3)    		 BS02 >6sv4:BS (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8k:3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0002181 ... P05743 32203490
    6 6sv4:AL
    (3.3)    		 BS02 >6sv4:BS (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8k:3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0002181 ... P04650 32203490
    7 6sv4:AQ
    (3.3)    		 BS02 >6sv4:BS (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8k:3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0002181 ... P05748 32203490
    8 6sv4:AX
    (3.3)    		 BS02 >6sv4:BS (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8k:3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0000448 ... P05740 32203490
    9 6sv4:BE
    (3.3)    		 BS02 >6sv4:BS (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8k:3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0002181 ... P10664 32203490
    10 6sv4:BP
    (3.3)    		 BS02 >6sv4:BS (identical to 6em3:2, 6i7o:BS, 6i7o:YS, 8k2d:C3, 6n8k:3, 6n8l:3, 5ndg:8, 5ndv:4, 8p8n:LD, 6sv4:YS, 6sv4:ZS, 6t83:Ca, 6woo:8, 7z34:3, 6z6j:C3, 6z6k:C3)
    aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
.......
    		 ? GO:0000463 ... P0CX84 32203490
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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