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BioLiP
Download all results in tab-seperated text for 3 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    Peptide
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 8wo5:A8
    (7.4)
    BS01 >8wo5:BL (identical to 8wk3:c, 8wk3:e, 8wk3:g, 8wk3:i, 8wk3:k, 8wkk:c, 8wkk:e, 8wkk:g, 8wkk:i, 8wkk:k, 8wkq:c, 8wkq:e, 8wkq:g, 8wkq:i, 8wkq:k, 8wl2:BH, 8wl2:BJ, 8wl2:BL, 8wl2:BN, 8wl2:BP, 8wlh:c, 8wlh:e, 8wlh:g, 8wlh:i, 8wlh:k, 8wln:c, 8wln:e, 8wln:g, 8wln:i, 8wln:k, 8wlq:c, 8wlq:e, 8wlq:g, 8wlq:i, 8wlq:k, 8wlt:BH, 8wlt:BJ, 8wlt:BL, 8wlt:BN, 8wlt:BP, 8wo5:BH, 8wo5:BJ, 8wo5:BN, 8wo5:BP, 8woe:BH, 8woe:BJ, 8woe:BL, 8woe:BN, 8woe:BP)
    PGGVPGALSNQPAPPN
    N/A N/A P16437 N/A
    2 8wo5:AC
    (7.4)
    BS01 >8wo5:BL (identical to 8wk3:c, 8wk3:e, 8wk3:g, 8wk3:i, 8wk3:k, 8wkk:c, 8wkk:e, 8wkk:g, 8wkk:i, 8wkk:k, 8wkq:c, 8wkq:e, 8wkq:g, 8wkq:i, 8wkq:k, 8wl2:BH, 8wl2:BJ, 8wl2:BL, 8wl2:BN, 8wl2:BP, 8wlh:c, 8wlh:e, 8wlh:g, 8wlh:i, 8wlh:k, 8wln:c, 8wln:e, 8wln:g, 8wln:i, 8wln:k, 8wlq:c, 8wlq:e, 8wlq:g, 8wlq:i, 8wlq:k, 8wlt:BH, 8wlt:BJ, 8wlt:BL, 8wlt:BN, 8wlt:BP, 8wo5:BH, 8wo5:BJ, 8wo5:BN, 8wo5:BP, 8woe:BH, 8woe:BJ, 8woe:BL, 8woe:BN, 8woe:BP)
    PGGVPGALSNQPAPPN
    N/A N/A P16323 N/A
    3 8wo5:BC
    (7.4)
    BS01 >8wo5:BL (identical to 8wk3:c, 8wk3:e, 8wk3:g, 8wk3:i, 8wk3:k, 8wkk:c, 8wkk:e, 8wkk:g, 8wkk:i, 8wkk:k, 8wkq:c, 8wkq:e, 8wkq:g, 8wkq:i, 8wkq:k, 8wl2:BH, 8wl2:BJ, 8wl2:BL, 8wl2:BN, 8wl2:BP, 8wlh:c, 8wlh:e, 8wlh:g, 8wlh:i, 8wlh:k, 8wln:c, 8wln:e, 8wln:g, 8wln:i, 8wln:k, 8wlq:c, 8wlq:e, 8wlq:g, 8wlq:i, 8wlq:k, 8wlt:BH, 8wlt:BJ, 8wlt:BL, 8wlt:BN, 8wlt:BP, 8wo5:BH, 8wo5:BJ, 8wo5:BN, 8wo5:BP, 8woe:BH, 8woe:BJ, 8woe:BL, 8woe:BN, 8woe:BP)
    PGGVPGALSNQPAPPN
    N/A N/A P0A1I7 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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