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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 4v46:AE
    (3.3)    		 BS01 >4v46:BE (identical to 4v46:BA, 4v46:BB, 4v46:BC, 4v46:BD, 4v46:BF, 4v46:BG, 4v46:BH, 4v46:BI, 4v46:BJ, 4v46:BK, 4v46:BL, 4v46:BM, 4v46:BN, 4v46:BO, 4v46:BP, 4v46:BQ, 4v46:BR, 4v46:BS, 4v46:BT, 4v46:BU, 4v46:BV, 4v46:BW, 4v46:BX, 4v46:BY, 4v46:BZ, 4v46:B0, 4v46:B1, 4v46:B2, 4v46:B3, 4v46:B4, 4v46:B5, 4v46:B6, 4v46:B7, 4v46:B8, 4v46:B9, 4v46:Ba, 4v46:Bb, 4v46:Bc, 4v46:Bd, 4v46:Be, 4v46:Bf, 4v46:Bg, 4v46:Bh, 4v46:Bi, 4v46:Bj, 4v46:Bk, 4v46:Bl, 4v46:Bm, 4v46:Bn, 4v46:Bo, 4v46:Bp, 4v46:Bq, 4v46:Br, 4v46:Bs, 4v46:Bt, 4v46:Bu, 4v46:Bv, 4v46:Bw, 4v46:Bx)
    TPCVPAECFDLLVRHCVACGLLRTP
    		 ? GO:0005164 ... Q9Y275 12715002
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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