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BioLiP
Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 4u24:BF
    (2.9)    		 BS02 >4u24:BB (identical to 8akn:b, 8am9:b, 8ana:b, 8ap4:b, 9ax7:b, 8aye:b, 8b0x:b, 7bl2:B, 7bl3:B, 7bl4:B, 7bl5:B, 7bl6:B, 8c8x:B, 8c8y:B, 8c8z:B, 8c90:B, 8c94:B, 8c95:B, 8ceu:b, 8cgd:b, 9cg5:b, 9cg6:b, 9cg7:b, 8eiu:b, 8emm:b, 9fbv:b, 8fto:b, 8g6w:b, 8g6x:b, 8g6y:b, 6gbz:B, 6gc0:B, 6gc4:B, 6gc8:B, 8hsp:b, 8htz:b, 8hu1:b, 6i7v:DB, 8ifb:b, 8ifc:b, 8j1z:b, 3jcn:B, 7k00:b, 7oiz:b, 7oj0:b, 8p16:3, 8p17:3, 8p18:3, 7p3k:b, 8phj:b, 8pva:b, 8q4f:b, 8qk7:3, 8qoa:b, 8r6c:b, 8r8m:b, 4u1u:BB, 4u1v:BB, 4u20:BB, 4u25:BB, 4u26:BB, 4u27:BB, 5u9f:02, 5u9g:02, 4v6t:BB, 4v7c:BB, 4v7d:AB, 4v9c:DB, 4v9d:CB, 4wf1:BB, 4woi:BB, 7y7c:b, 7y7d:b, 7y7e:b, 7y7f:b, 7y7g:b, 7y7h:b)
    ugccuggcggccguagcgcgguggucccaccugaccccaugccgaacuca
gaagugaaacgccguagcgccgaugguaguguggggucuccccaugcgag
aguagggaacugccaggca
<<<<<<<<<<.....<<<<<<<<....<<<<<<<.............>>>
>..>>>...>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>...
....>>...>>>>>>>>>>
    		 ? GO:0000027 ... P62399 24957822
    2 4u24:BM
    (2.9)    		 BS02 >4u24:BB (identical to 8akn:b, 8am9:b, 8ana:b, 8ap4:b, 9ax7:b, 8aye:b, 8b0x:b, 7bl2:B, 7bl3:B, 7bl4:B, 7bl5:B, 7bl6:B, 8c8x:B, 8c8y:B, 8c8z:B, 8c90:B, 8c94:B, 8c95:B, 8ceu:b, 8cgd:b, 9cg5:b, 9cg6:b, 9cg7:b, 8eiu:b, 8emm:b, 9fbv:b, 8fto:b, 8g6w:b, 8g6x:b, 8g6y:b, 6gbz:B, 6gc0:B, 6gc4:B, 6gc8:B, 8hsp:b, 8htz:b, 8hu1:b, 6i7v:DB, 8ifb:b, 8ifc:b, 8j1z:b, 3jcn:B, 7k00:b, 7oiz:b, 7oj0:b, 8p16:3, 8p17:3, 8p18:3, 7p3k:b, 8phj:b, 8pva:b, 8q4f:b, 8qk7:3, 8qoa:b, 8r6c:b, 8r8m:b, 4u1u:BB, 4u1v:BB, 4u20:BB, 4u25:BB, 4u26:BB, 4u27:BB, 5u9f:02, 5u9g:02, 4v6t:BB, 4v7c:BB, 4v7d:AB, 4v9c:DB, 4v9d:CB, 4wf1:BB, 4woi:BB, 7y7c:b, 7y7d:b, 7y7e:b, 7y7f:b, 7y7g:b, 7y7h:b)
    ugccuggcggccguagcgcgguggucccaccugaccccaugccgaacuca
gaagugaaacgccguagcgccgaugguaguguggggucuccccaugcgag
aguagggaacugccaggca
<<<<<<<<<<.....<<<<<<<<....<<<<<<<.............>>>
>..>>>...>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>...
....>>...>>>>>>>>>>
    		 ? GO:0000027 ... P0ADY7 24957822
    3 4u24:BO
    (2.9)    		 BS02 >4u24:BB (identical to 8akn:b, 8am9:b, 8ana:b, 8ap4:b, 9ax7:b, 8aye:b, 8b0x:b, 7bl2:B, 7bl3:B, 7bl4:B, 7bl5:B, 7bl6:B, 8c8x:B, 8c8y:B, 8c8z:B, 8c90:B, 8c94:B, 8c95:B, 8ceu:b, 8cgd:b, 9cg5:b, 9cg6:b, 9cg7:b, 8eiu:b, 8emm:b, 9fbv:b, 8fto:b, 8g6w:b, 8g6x:b, 8g6y:b, 6gbz:B, 6gc0:B, 6gc4:B, 6gc8:B, 8hsp:b, 8htz:b, 8hu1:b, 6i7v:DB, 8ifb:b, 8ifc:b, 8j1z:b, 3jcn:B, 7k00:b, 7oiz:b, 7oj0:b, 8p16:3, 8p17:3, 8p18:3, 7p3k:b, 8phj:b, 8pva:b, 8q4f:b, 8qk7:3, 8qoa:b, 8r6c:b, 8r8m:b, 4u1u:BB, 4u1v:BB, 4u20:BB, 4u25:BB, 4u26:BB, 4u27:BB, 5u9f:02, 5u9g:02, 4v6t:BB, 4v7c:BB, 4v7d:AB, 4v9c:DB, 4v9d:CB, 4wf1:BB, 4woi:BB, 7y7c:b, 7y7d:b, 7y7e:b, 7y7f:b, 7y7g:b, 7y7h:b)
    ugccuggcggccguagcgcgguggucccaccugaccccaugccgaacuca
gaagugaaacgccguagcgccgaugguaguguggggucuccccaugcgag
aguagggaacugccaggca
<<<<<<<<<<.....<<<<<<<<....<<<<<<<.............>>>
>..>>>...>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>...
....>>...>>>>>>>>>>
    		 ? GO:0002181 ... P0C018 24957822
    4 4u24:BV
    (2.9)    		 BS02 >4u24:BB (identical to 8akn:b, 8am9:b, 8ana:b, 8ap4:b, 9ax7:b, 8aye:b, 8b0x:b, 7bl2:B, 7bl3:B, 7bl4:B, 7bl5:B, 7bl6:B, 8c8x:B, 8c8y:B, 8c8z:B, 8c90:B, 8c94:B, 8c95:B, 8ceu:b, 8cgd:b, 9cg5:b, 9cg6:b, 9cg7:b, 8eiu:b, 8emm:b, 9fbv:b, 8fto:b, 8g6w:b, 8g6x:b, 8g6y:b, 6gbz:B, 6gc0:B, 6gc4:B, 6gc8:B, 8hsp:b, 8htz:b, 8hu1:b, 6i7v:DB, 8ifb:b, 8ifc:b, 8j1z:b, 3jcn:B, 7k00:b, 7oiz:b, 7oj0:b, 8p16:3, 8p17:3, 8p18:3, 7p3k:b, 8phj:b, 8pva:b, 8q4f:b, 8qk7:3, 8qoa:b, 8r6c:b, 8r8m:b, 4u1u:BB, 4u1v:BB, 4u20:BB, 4u25:BB, 4u26:BB, 4u27:BB, 5u9f:02, 5u9g:02, 4v6t:BB, 4v7c:BB, 4v7d:AB, 4v9c:DB, 4v9d:CB, 4wf1:BB, 4woi:BB, 7y7c:b, 7y7d:b, 7y7e:b, 7y7f:b, 7y7g:b, 7y7h:b)
    ugccuggcggccguagcgcgguggucccaccugaccccaugccgaacuca
gaagugaaacgccguagcgccgaugguaguguggggucuccccaugcgag
aguagggaacugccaggca
<<<<<<<<<<.....<<<<<<<<....<<<<<<<.............>>>
>..>>>...>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>...
....>>...>>>>>>>>>>
    		 ? GO:0000027 ... P68919 24957822
    5 4u24:BW
    (2.9)    		 BS02 >4u24:BB (identical to 8akn:b, 8am9:b, 8ana:b, 8ap4:b, 9ax7:b, 8aye:b, 8b0x:b, 7bl2:B, 7bl3:B, 7bl4:B, 7bl5:B, 7bl6:B, 8c8x:B, 8c8y:B, 8c8z:B, 8c90:B, 8c94:B, 8c95:B, 8ceu:b, 8cgd:b, 9cg5:b, 9cg6:b, 9cg7:b, 8eiu:b, 8emm:b, 9fbv:b, 8fto:b, 8g6w:b, 8g6x:b, 8g6y:b, 6gbz:B, 6gc0:B, 6gc4:B, 6gc8:B, 8hsp:b, 8htz:b, 8hu1:b, 6i7v:DB, 8ifb:b, 8ifc:b, 8j1z:b, 3jcn:B, 7k00:b, 7oiz:b, 7oj0:b, 8p16:3, 8p17:3, 8p18:3, 7p3k:b, 8phj:b, 8pva:b, 8q4f:b, 8qk7:3, 8qoa:b, 8r6c:b, 8r8m:b, 4u1u:BB, 4u1v:BB, 4u20:BB, 4u25:BB, 4u26:BB, 4u27:BB, 5u9f:02, 5u9g:02, 4v6t:BB, 4v7c:BB, 4v7d:AB, 4v9c:DB, 4v9d:CB, 4wf1:BB, 4woi:BB, 7y7c:b, 7y7d:b, 7y7e:b, 7y7f:b, 7y7g:b, 7y7h:b)
    ugccuggcggccguagcgcgguggucccaccugaccccaugccgaacuca
gaagugaaacgccguagcgccgaugguaguguggggucuccccaugcgag
aguagggaacugccaggca
<<<<<<<<<<.....<<<<<<<<....<<<<<<<.............>>>
>..>>>...>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>...
....>>...>>>>>>>>>>
    		 ? GO:0003735 ... P0A7L8 24957822
    6 4u24:BZ
    (2.9)    		 BS02 >4u24:BB (identical to 8akn:b, 8am9:b, 8ana:b, 8ap4:b, 9ax7:b, 8aye:b, 8b0x:b, 7bl2:B, 7bl3:B, 7bl4:B, 7bl5:B, 7bl6:B, 8c8x:B, 8c8y:B, 8c8z:B, 8c90:B, 8c94:B, 8c95:B, 8ceu:b, 8cgd:b, 9cg5:b, 9cg6:b, 9cg7:b, 8eiu:b, 8emm:b, 9fbv:b, 8fto:b, 8g6w:b, 8g6x:b, 8g6y:b, 6gbz:B, 6gc0:B, 6gc4:B, 6gc8:B, 8hsp:b, 8htz:b, 8hu1:b, 6i7v:DB, 8ifb:b, 8ifc:b, 8j1z:b, 3jcn:B, 7k00:b, 7oiz:b, 7oj0:b, 8p16:3, 8p17:3, 8p18:3, 7p3k:b, 8phj:b, 8pva:b, 8q4f:b, 8qk7:3, 8qoa:b, 8r6c:b, 8r8m:b, 4u1u:BB, 4u1v:BB, 4u20:BB, 4u25:BB, 4u26:BB, 4u27:BB, 5u9f:02, 5u9g:02, 4v6t:BB, 4v7c:BB, 4v7d:AB, 4v9c:DB, 4v9d:CB, 4wf1:BB, 4woi:BB, 7y7c:b, 7y7d:b, 7y7e:b, 7y7f:b, 7y7g:b, 7y7h:b)
    ugccuggcggccguagcgcgguggucccaccugaccccaugccgaacuca
gaagugaaacgccguagcgccgaugguaguguggggucuccccaugcgag
aguagggaacugccaggca
<<<<<<<<<<.....<<<<<<<<....<<<<<<<.............>>>
>..>>>...>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>...
....>>...>>>>>>>>>>
    		 ? GO:0000027 ... P0AG51 24957822
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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