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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		DNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6ola:A3
    (3.3)    		 BS01 >6ola:B3 (identical to 6ola:B0, 6ola:B1, 6ola:B2, 6ola:B4, 6ola:B5, 6ola:B6, 6ola:B7, 6ola:B8, 6ola:B9, 6ola:BA, 6ola:BB, 6ola:BC, 6ola:BD, 6ola:BE, 6ola:BF, 6ola:BG, 6ola:BH, 6ola:BI, 6ola:BJ, 6ola:BK, 6ola:BL, 6ola:BM, 6ola:BN, 6ola:BO, 6ola:BP, 6ola:BQ, 6ola:BR, 6ola:BS, 6ola:BT, 6ola:BU, 6ola:BV, 6ola:BW, 6ola:BX, 6ola:BY, 6ola:BZ, 6ola:Ba, 6ola:Bb, 6ola:Bc, 6ola:Bd, 6ola:Be, 6ola:Bf, 6ola:Bg, 6ola:Bh, 6ola:Bi, 6ola:Bj, 6ola:Bk, 6ola:Bl, 6ola:Bm, 6ola:Bn, 6ola:Bo, 6ola:Bp, 6ola:Bq, 6ola:Br, 6ola:Bs, 6ola:Bt, 6ola:Bu, 6ola:Bv, 6ola:Bw, 6ola:Bx)
    ccgg
    		 ? GO:0019069 ... G0ZPI6 31505320
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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