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BioLiP
Download all results in tab-seperated text for 55 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7d0j:9 (3.42) BS01 CLA ? GO:0009765 ... Q8S567 33597543
    2 7d0j:9 (3.42) BS02 CLA ? GO:0009765 ... Q8S567 33597543
    3 7d0j:A (3.42) BS44 CLA 1.97.1.12 GO:0000287 ... P12154 33597543
    4 7d0j:B (3.42) BS01 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    5 7d0j:B (3.42) BS02 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    6 7d0j:B (3.42) BS03 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    7 7d0j:B (3.42) BS04 SF4 1.97.1.12 GO:0000287 ... P09144 33597543
    8 7d0j:B (3.42) BS05 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    9 7d0j:B (3.42) BS06 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    10 7d0j:B (3.42) BS07 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    11 7d0j:B (3.42) BS08 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    12 7d0j:B (3.42) BS09 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    13 7d0j:B (3.42) BS10 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    14 7d0j:B (3.42) BS11 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    15 7d0j:B (3.42) BS12 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    16 7d0j:B (3.42) BS13 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    17 7d0j:B (3.42) BS14 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    18 7d0j:B (3.42) BS15 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    19 7d0j:B (3.42) BS16 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    20 7d0j:B (3.42) BS17 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    21 7d0j:B (3.42) BS18 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    22 7d0j:B (3.42) BS19 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    23 7d0j:B (3.42) BS20 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    24 7d0j:B (3.42) BS21 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    25 7d0j:B (3.42) BS22 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    26 7d0j:B (3.42) BS23 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    27 7d0j:B (3.42) BS24 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    28 7d0j:B (3.42) BS25 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    29 7d0j:B (3.42) BS26 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    30 7d0j:B (3.42) BS27 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    31 7d0j:B (3.42) BS28 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    32 7d0j:B (3.42) BS29 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    33 7d0j:B (3.42) BS30 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    34 7d0j:B (3.42) BS31 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    35 7d0j:B (3.42) BS32 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    36 7d0j:B (3.42) BS33 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    37 7d0j:B (3.42) BS34 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    38 7d0j:B (3.42) BS35 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    39 7d0j:B (3.42) BS36 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    40 7d0j:B (3.42) BS37 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    41 7d0j:B (3.42) BS38 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    42 7d0j:B (3.42) BS39 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    43 7d0j:B (3.42) BS40 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    44 7d0j:B (3.42) BS41 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    45 7d0j:B (3.42) BS42 PQN 1.97.1.12 GO:0000287 ... P09144 33597543
    46 7d0j:B (3.42) BS43 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    47 7d0j:B (3.42) BS44 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    48 7d0j:B (3.42) BS45 CLA 1.97.1.12 GO:0000287 ... P09144 33597543
    49 7d0j:F (3.42) BS02 CLA ? GO:0009522 ... P12356 33597543
    50 7d0j:F (3.42) BS03 CLA ? GO:0009522 ... P12356 33597543
    51 7d0j:G (3.42) BS01 CLA ? GO:0009522 ... P14224 33597543
    52 7d0j:G (3.42) BS02 CLA ? GO:0009522 ... P14224 33597543
    53 7d0j:H (3.42) BS01 CLA ? GO:0009522 ... P13352 33597543
    54 7d0j:I (3.42) BS01 CLA ? GO:0009522 ... A8IFG7 33597543
    55 7d0j:L (3.42) BS02 CLA ? GO:0009522 ... A8IL32 33597543
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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