Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ijj:1 (2.89) BS01 CLA ? GO:0009416 ... Q05093 30850819
    2 6ijj:A (2.89) BS48 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    3 6ijj:A (2.89) BS49 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    4 6ijj:A (2.89) BS50 CLA 1.97.1.12 GO:0000287 ... P12154 30850819
    5 6ijj:B (2.89) BS01 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    6 6ijj:B (2.89) BS02 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    7 6ijj:B (2.89) BS03 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    8 6ijj:B (2.89) BS04 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    9 6ijj:B (2.89) BS05 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    10 6ijj:B (2.89) BS06 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    11 6ijj:B (2.89) BS07 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    12 6ijj:B (2.89) BS08 SF4 1.97.1.12 GO:0000287 ... P09144 30850819
    13 6ijj:B (2.89) BS09 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    14 6ijj:B (2.89) BS10 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    15 6ijj:B (2.89) BS11 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    16 6ijj:B (2.89) BS12 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    17 6ijj:B (2.89) BS13 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    18 6ijj:B (2.89) BS14 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    19 6ijj:B (2.89) BS15 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    20 6ijj:B (2.89) BS16 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    21 6ijj:B (2.89) BS17 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    22 6ijj:B (2.89) BS18 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    23 6ijj:B (2.89) BS19 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    24 6ijj:B (2.89) BS20 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    25 6ijj:B (2.89) BS21 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    26 6ijj:B (2.89) BS22 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    27 6ijj:B (2.89) BS23 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    28 6ijj:B (2.89) BS24 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    29 6ijj:B (2.89) BS25 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    30 6ijj:B (2.89) BS26 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    31 6ijj:B (2.89) BS27 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    32 6ijj:B (2.89) BS28 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    33 6ijj:B (2.89) BS29 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    34 6ijj:B (2.89) BS30 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    35 6ijj:B (2.89) BS31 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    36 6ijj:B (2.89) BS32 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    37 6ijj:B (2.89) BS33 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    38 6ijj:B (2.89) BS34 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    39 6ijj:B (2.89) BS35 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    40 6ijj:B (2.89) BS36 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    41 6ijj:B (2.89) BS37 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    42 6ijj:B (2.89) BS38 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    43 6ijj:B (2.89) BS39 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    44 6ijj:B (2.89) BS40 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    45 6ijj:B (2.89) BS41 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    46 6ijj:B (2.89) BS42 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    47 6ijj:B (2.89) BS43 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    48 6ijj:B (2.89) BS44 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    49 6ijj:B (2.89) BS45 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    50 6ijj:B (2.89) BS46 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    51 6ijj:B (2.89) BS47 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    52 6ijj:B (2.89) BS48 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    53 6ijj:B (2.89) BS49 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    54 6ijj:B (2.89) BS50 PQN 1.97.1.12 GO:0000287 ... P09144 30850819
    55 6ijj:B (2.89) BS51 CLA 1.97.1.12 GO:0000287 ... P09144 30850819
    56 6ijj:F (2.89) BS02 CLA ? GO:0005515 ... P12356 30850819
    57 6ijj:I (2.89) BS01 CLA ? GO:0009522 ... A8IFG7 30850819
    58 6ijj:I (2.89) BS02 CLA ? GO:0009522 ... A8IFG7 30850819
    59 6ijj:J (2.89) BS02 CLA ? GO:0009507 ... P59777 30850819
    60 6ijj:L (2.89) BS02 CLA ? GO:0009522 ... A8IL32 30850819
    61 6ijj:L (2.89) BS03 CLA ? GO:0009522 ... A8IL32 30850819
    62 6ijj:L (2.89) BS04 CLA ? GO:0009522 ... A8IL32 30850819
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218