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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8pdl:A
    (3.1)    		 BS01 >8pdl:B (identical to 8op1:F, 8op1:G, 8op1:H, 8op1:I, 8op1:J, 8pdm:B, 8pdn:a, 8pdn:b, 8pdn:c, 8pdn:d, 8pdn:e, 8pdn:f, 8pdn:g, 8pdn:h, 8pdn:i, 8pdn:j, 8pdn:k, 8pdn:l, 8pdp:E, 8pdq:E, 8pdr:a, 8pdr:b, 8pdr:c, 8pdr:d, 8pdr:e, 8pdr:f, 8pdr:g, 8pdr:h, 8pdr:i, 8pdr:j, 8pdr:k, 2wj8:a, 2wj8:b, 2wj8:c, 2wj8:d, 2wj8:e, 2wj8:f, 2wj8:g, 2wj8:h, 2wj8:i, 2wj8:j, 2wj8:k, 2wj8:l, 2wj8:m, 2wj8:n, 2wj8:o, 2wj8:p, 2wj8:q, 2wj8:r, 2wj8:s, 2wj8:t)
    ccccccc
.......
    		 ? GO:0003723 ... Q6WBA1 37993464
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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