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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6dor:A
    (1.5)    		 BS01 >6dor:B (identical to 6dmn:B, 6dmv:B, 6do8:B, 6do9:B, 6doa:B, 6dob:B, 6doc:B, 6dod:B, 6doe:B, 6dof:B, 6dog:B, 6doh:B, 6doi:B, 6doj:B, 6dok:B, 6dol:B, 6dom:B, 6don:B, 6doo:B, 6dop:B, 6doq:B, 6dos:B, 6dot:B, 6dou:B, 6dov:B, 6dow:B, 6dox:B, 6doz:B, 6dp0:B, 6dp1:B, 6dp2:B, 6dp3:B, 6dp4:B, 6dp5:B, 6dp6:B, 6dp7:B, 6dp8:B, 6dp9:B, 6dpa:B, 6dpb:B, 6dpc:B, 6dpd:B, 6dpe:B, 6dpf:B, 6dpg:B, 6dph:B, 6dpi:B, 6dpj:B, 6dpk:B, 6dpl:B, 6dpm:B, 6dpn:B, 6dpo:B, 6dpp:B)
    acau
....
    		 3.1.26.4 GO:0003676 ... Q9KEI9 30076410
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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