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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7nke:A
    (2.35)    		 BS01 >7nke:B (identical to 2b23:C, 6d0f:D, 5di7:C, 5di7:D, 5did:C, 5did:D, 5die:C, 5die:D, 5dig:C, 5dig:D, 5dkb:C, 5dkb:D, 5dke:C, 5dke:D, 5dkg:C, 5dkg:D, 5dl4:C, 5dl4:D, 5dlr:C, 5dlr:D, 5dmc:C, 5dmf:D, 5drj:C, 5drj:D, 5drm:C, 5due:C, 5dug:C, 5duh:C, 5dwi:C, 5dwj:C, 5dxk:C, 5dxp:C, 5dxq:C, 5dy8:C, 5dyb:C, 5dz0:C, 5dz1:C, 5dzh:C, 5dzi:D, 5e0w:D, 5e14:D, 5e19:D, 5e1c:D, 3e94:B, 5egv:C, 5ehj:D, 5ei1:C, 2fai:C, 2fai:D, 2g5o:C, 3hlv:D, 3hm1:C, 4iqr:J, 4iu7:C, 4iv2:C, 4iv4:C, 4ivw:C, 4ivy:C, 4iw6:C, 4iw8:C, 4iw8:D, 4iwc:C, 4iwf:C, 5kcd:C, 5kce:C, 5kcf:D, 5kct:C, 5kcu:C, 5kcw:C, 5kd9:C, 5kra:C, 5kra:G, 5kra:H, 5krc:C, 5krc:D, 5krf:C, 5krf:D, 5krh:C, 5krh:D, 5kri:C, 5krj:C, 5krj:D, 5krk:C, 5krl:C, 3kwy:B, 1l2i:C, 6lb5:B, 6lb6:B, 5lyq:B, 7nfb:C, 4nie:D, 7nke:D, 4nqa:C, 4oc7:B, 3ozj:B, 2p1t:B, 2p1u:B, 2p1v:B, 3pcu:B, 2q6j:D, 2qa8:C, 2qh6:C, 2qh6:D, 2qr9:C, 2qse:C, 2qxm:D, 3r5m:B, 3r5m:D, 7rke:D, 7sfo:D, 5t1z:C, 7t2x:D, 5tld:C, 5tlf:C, 5tlp:C, 5tlt:C, 5tlu:C, 5tlx:C, 5tly:D, 5tm5:D, 5tm6:C, 5tm7:C, 5tm8:D, 5tmo:C, 5tms:C, 5tmu:D, 5tmw:D, 5tmz:C, 5tn5:D, 5tn6:C, 5tn6:D, 5uan:C, 1uhl:D, 7uw2:B, 7uw4:B, 1zky:C, 4zn9:C, 4zns:C, 4znv:D, 4znw:C, 2zy0:B)
    HKILHRLLQD
    		 ? GO:0003677 ... P19793 36750942
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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