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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5mkj:A
    (2.5)    		 BS01 >5mkj:B (identical to 2b1v:C, 2b1v:D, 2b1z:D, 2b23:D, 6czn:D, 6d0f:C, 5dk9:C, 5dk9:D, 5dks:C, 5dks:D, 5dmc:D, 5dp0:C, 5dp0:D, 5drm:D, 5dtv:C, 5dtv:D, 5du5:C, 5du5:D, 5due:D, 5dug:D, 5duh:D, 5dvs:C, 5dvs:D, 5dwe:C, 5dwe:D, 5dwi:D, 5dwj:D, 5dxk:D, 5dxm:C, 5dxm:D, 5dxp:D, 5dxr:C, 5dy8:D, 5dyb:D, 5dyd:C, 5dyd:D, 3dzu:G, 3dzy:G, 5dz1:D, 5dz3:D, 3e00:G, 5e0x:C, 5e0x:D, 5e14:C, 5e15:C, 5e15:D, 5e19:C, 5egv:D, 5ehj:C, 5ei1:D, 5eit:D, 8ev1:C, 8ev1:D, 8ev2:C, 2g44:C, 2g44:D, 2g5o:D, 1gwq:C, 1gwq:D, 3hlv:C, 3hm1:D, 4iu7:D, 4iui:C, 4iui:D, 4iv2:D, 4iv4:D, 4ivw:D, 4ivy:D, 4iw6:D, 4iwc:D, 4iwf:D, 5kcd:D, 5kcf:C, 5kct:D, 5kcu:D, 5kcw:D, 5kd9:D, 5kr9:D, 5kra:D, 5kri:D, 5krk:D, 5krl:D, 5krm:C, 5kro:C, 5kro:D, 3l03:D, 4pp6:C, 4pp6:D, 4ppp:D, 4pps:D, 2qa6:C, 2qa8:D, 2qab:D, 2qgw:D, 2qzo:D, 7rnm:D, 5tld:D, 5tlg:C, 5tlg:D, 5tll:C, 5tll:D, 5tlm:C, 5tlo:C, 5tlo:D, 5tlt:D, 5tlu:D, 5tly:C, 5tm1:D, 5tm2:C, 5tm2:D, 5tm3:C, 5tm4:C, 5tm5:C, 5tm9:C, 5tml:C, 5tmm:D, 5tmq:C, 5tmt:C, 5tmw:C, 5tn1:C, 5tn7:C, 5tn7:D, 5tn8:C, 5tn8:D, 7w3q:C, 1zky:D, 4zn7:C, 4znh:C, 4znh:D, 4zns:D, 4znt:C, 4znt:D, 4znu:C, 4znv:C, 4znw:D)
    KILHRLLQD
    		 ? GO:0003677 ... P19793 28691794
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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