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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 3nx8:A
    (2.0)    		 BS01 >3nx8:B (identical to 7axt:B, 7axw:B, 7baq:B, 7bb0:B, 4c33:I, 4c34:I, 4c35:I, 1ctp:I, 3e8c:G, 6e99:B, 6e9l:B, 6egw:B, 6erv:B, 6erw:D, 6f14:B, 4ij9:I, 3l9l:D, 3l9m:D, 5lcq:B, 5m0l:B, 5n1d:B, 5ol3:D, 3oog:B, 5otg:D, 5oua:B, 3oxt:B, 7pid:B, 7pie:B, 7pns:B, 3qal:I, 5uzk:I, 5vhb:B, 5vi9:B, 5vib:B, 6y05:B, 6y2o:B, 6y2u:B, 6y8c:B, 3zo1:I, 3zo2:I, 3zo3:I)
    TTYADFIASGRTGRRNAI
    		 2.7.11.11 GO:0000287 ... P17612 22213702
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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