Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8opc:Am
    (2.99)    		 BS01 >8opc:An (identical to 8acb:B, 8acc:B, 5bkl:i, 5bkl:ll, 5bkn:i, 5bkn:ll, 5bud:E, 5c0y:C, 8enk:N, 5fn1:B, 6hxx:Aa, 6hxx:Ab, 6hxx:Ac, 6hxx:Ad, 6hxx:Ae, 6hxx:Af, 6hxx:Ag, 6hxx:Ah, 6hxx:Ai, 6hxx:Aj, 6hxx:Ak, 6hxx:Al, 6hxx:Am, 6hxx:An, 6hxx:Ao, 6hxx:Ap, 6hxx:Aq, 6hxx:Ar, 6hxx:As, 6hxx:At, 6hxx:Au, 6hxx:Av, 6hxx:Aw, 6hxx:Ax, 6hxx:Ay, 6hxx:Az, 6hxx:Ba, 6hxx:Bb, 6hxx:Bc, 6hxx:Bd, 6hxx:Be, 6hxx:Bf, 6hxx:Bg, 6hxx:Bh, 6hxx:Bi, 5ip2:E, 4j7l:B, 4j7m:B, 7m3t:i, 7m3t:ll, 7m50:i, 1m8v:T, 5odv:a, 5odv:b, 5odv:c, 5odv:d, 5odv:e, 5odv:f, 5odv:g, 5odv:h, 5odv:i, 5odv:j, 5odv:k, 5odv:l, 5odv:m, 5odv:n, 5odv:o, 5odv:p, 5odv:q, 5odv:r, 5odv:s, 5odv:t, 5odv:u, 5odv:v, 5odv:w, 5odv:x, 7og6:R, 8opc:Ab, 8opc:Ad, 8opc:Af, 8opc:Ah, 8opc:Aj, 8opc:Al, 8opc:Ap, 8opc:Ar, 8opc:At, 8opc:Av, 8opc:Ax, 8opc:Az, 8opc:Bb, 8opc:Bd, 8opc:Bf, 8opc:Bh, 8opc:Bj, 8opc:Bl, 8opc:Bn, 8opc:Bp, 8opc:Br, 8opc:Bt, 8opc:Bv, 8opc:Bx, 8opc:Bz, 8opc:Cb, 8opc:Cd, 8ope:Ab, 8ope:Ad, 8ope:Af, 8ope:Ah, 8ope:Aj, 8ope:Al, 8ope:An, 8ope:Ap, 8ope:Ar, 8ope:At, 8ope:Av, 8ope:Ax, 8ope:Az, 8ope:Bb, 8ope:Bd, 8ope:Bf, 8ope:Bh, 8ope:Bj, 8ope:Bl, 8ope:Bn, 8ope:Bp, 8opl:Aj, 8opl:Ak, 8opl:Al, 8opl:Am, 8opl:An, 8opl:Ao, 8opl:Ap, 8opl:Aq, 8opl:Ar, 8opl:Bb, 8opl:Bc, 8opl:Bd, 8opl:Be, 8opl:Bf, 8opl:Bg, 8opl:Bh, 8opl:Bi, 8opl:Bj, 8opl:Bt, 8opl:Bu, 8opl:Bv, 8opl:Bw, 8opl:Bx, 8opl:By, 8opl:Bz, 8opl:Ca, 8opl:Cb, 3pf5:R, 6ppn:A, 6ppn:I, 8r08:Z1, 6t34:a, 6t34:b, 6t34:c, 6t34:d, 6t34:e, 6t34:f, 6t34:g, 6t34:h, 6t34:i, 6t34:j, 6t34:k, 6t34:l, 6t34:m, 6t34:n, 6t34:o, 6t34:p, 6t34:q, 6t34:r, 6t34:s, 6wre:D, 7z52:R)
    uuuuu
.....
    		 ? GO:0019028 ... A0A0A7DIV0 38233506
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218