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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 8yjt:AW
    (5.9)    		 BS02 >8yjt:Ad (identical to 8wiw:C, 8wiw:D, 8wiw:E, 8wiw:F, 8wiw:G, 8wiw:H, 8wiw:I, 8wiw:J, 8wiw:K, 8wiw:L, 8wiw:M, 8wiw:N, 8wiw:O, 8wiw:P, 8wiw:Q, 8wiw:R, 8wiw:A2, 8wiw:A9, 8wiw:BF, 8wiw:BM, 8wiw:BT, 8wiw:Ba, 8wiw:Bh, 8wiw:Bo, 8wiw:Bv, 8wiw:B3, 8wiw:B0, 8wiw:CG, 8wiw:CN, 8wiw:CU, 8wiw:Cb, 8wiw:Ci, 8wiw:Cp, 8wiw:Cw, 8wo5:C3, 8wo5:C7, 8wo5:DE, 8wo5:DK, 8wo5:DR, 8wo5:DX, 8wo5:Dd, 8wo5:Dj, 8wo5:Dp, 8wo5:Dv, 8wo5:D2, 8wo5:D8, 8wo5:B6, 8wo5:EF, 8wo5:EL, 8wo5:ER, 8wo5:EX, 8wo5:Bb, 8wo5:Bh, 8wo5:Bn, 8wo5:Bt, 8wo5:Bz, 8wo5:CB, 8wo5:CH, 8wo5:CN, 8wo5:CT, 8wo5:CZ, 8wo5:Cf, 8wo5:Cl, 8wo5:Cr, 8wo5:Cx, 8wo5:Eb, 8wo5:Eh, 8wo5:En, 8woe:DE, 8woe:DL, 8woe:B0, 8woe:B3, 8woe:EH, 8woe:EO, 8woe:EV, 8woe:Ba, 8woe:Bh, 8woe:Bo, 8woe:Bv, 8woe:Ea, 8woe:CG, 8woe:CN, 8woe:CU, 8woe:Cb, 8woe:Ci, 8woe:Cp, 8woe:Cw, 8woe:Eb, 8woe:Ec, 8woe:Ed, 8woe:Ee, 8woe:Ef, 8woe:Eg, 8woe:Eh, 8woe:Ei, 8woe:Ej, 8woe:Ek, 8woe:El, 8woe:Em, 8woe:En, 8woe:Eo, 8woe:Ep, 8xp0:N, 8xp0:T, 8xp0:Z, 8xp1:C, 8xp1:D, 8xp1:E, 8yjt:l, 8yjt:r, 8yjt:x, 8yjt:4, 8yjt:0, 8yjt:AF, 8yjt:AL, 8yjt:AR, 8yjt:AX, 8yjt:Aj, 8yjt:Ap, 8yjt:Av, 8yjt:A2, 8yjt:A8, 8yjt:BD, 8yjt:BJ, 8yjt:BP, 8yjt:BV, 8yjt:Bb, 8yjt:Bh, 8yjt:Bn, 8yjt:Bt, 8yjt:Bz, 8yjt:B6, 8yjt:CB, 8yjt:CH, 8yjt:CN, 8yjt:CT, 8yjt:CZ, 8yjt:Cf, 8yjt:Cl, 8yjt:Cr, 8yjt:Cx)
    MSQRIREMSDNDPRVVALVIRQWMSND
    		 N/A N/A P0A1J9 N/A
    2 8yjt:Ac
    (5.9)    		 BS01 >8yjt:Ad (identical to 8wiw:C, 8wiw:D, 8wiw:E, 8wiw:F, 8wiw:G, 8wiw:H, 8wiw:I, 8wiw:J, 8wiw:K, 8wiw:L, 8wiw:M, 8wiw:N, 8wiw:O, 8wiw:P, 8wiw:Q, 8wiw:R, 8wiw:A2, 8wiw:A9, 8wiw:BF, 8wiw:BM, 8wiw:BT, 8wiw:Ba, 8wiw:Bh, 8wiw:Bo, 8wiw:Bv, 8wiw:B3, 8wiw:B0, 8wiw:CG, 8wiw:CN, 8wiw:CU, 8wiw:Cb, 8wiw:Ci, 8wiw:Cp, 8wiw:Cw, 8wo5:C3, 8wo5:C7, 8wo5:DE, 8wo5:DK, 8wo5:DR, 8wo5:DX, 8wo5:Dd, 8wo5:Dj, 8wo5:Dp, 8wo5:Dv, 8wo5:D2, 8wo5:D8, 8wo5:B6, 8wo5:EF, 8wo5:EL, 8wo5:ER, 8wo5:EX, 8wo5:Bb, 8wo5:Bh, 8wo5:Bn, 8wo5:Bt, 8wo5:Bz, 8wo5:CB, 8wo5:CH, 8wo5:CN, 8wo5:CT, 8wo5:CZ, 8wo5:Cf, 8wo5:Cl, 8wo5:Cr, 8wo5:Cx, 8wo5:Eb, 8wo5:Eh, 8wo5:En, 8woe:DE, 8woe:DL, 8woe:B0, 8woe:B3, 8woe:EH, 8woe:EO, 8woe:EV, 8woe:Ba, 8woe:Bh, 8woe:Bo, 8woe:Bv, 8woe:Ea, 8woe:CG, 8woe:CN, 8woe:CU, 8woe:Cb, 8woe:Ci, 8woe:Cp, 8woe:Cw, 8woe:Eb, 8woe:Ec, 8woe:Ed, 8woe:Ee, 8woe:Ef, 8woe:Eg, 8woe:Eh, 8woe:Ei, 8woe:Ej, 8woe:Ek, 8woe:El, 8woe:Em, 8woe:En, 8woe:Eo, 8woe:Ep, 8xp0:N, 8xp0:T, 8xp0:Z, 8xp1:C, 8xp1:D, 8xp1:E, 8yjt:l, 8yjt:r, 8yjt:x, 8yjt:4, 8yjt:0, 8yjt:AF, 8yjt:AL, 8yjt:AR, 8yjt:AX, 8yjt:Aj, 8yjt:Ap, 8yjt:Av, 8yjt:A2, 8yjt:A8, 8yjt:BD, 8yjt:BJ, 8yjt:BP, 8yjt:BV, 8yjt:Bb, 8yjt:Bh, 8yjt:Bn, 8yjt:Bt, 8yjt:Bz, 8yjt:B6, 8yjt:CB, 8yjt:CH, 8yjt:CN, 8yjt:CT, 8yjt:CZ, 8yjt:Cf, 8yjt:Cl, 8yjt:Cr, 8yjt:Cx)
    MSQRIREMSDNDPRVVALVIRQWMSND
    		 N/A N/A P0A1J9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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