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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 6ydp:Ah
    (3.0)    		 BS01 >6ydp:AZ (identical to 8agv:1, 8agx:1, 8agz:1, 7cgo:GF, 7cgo:GH, 7cgo:GJ, 7cgo:GK, 7e81:GF, 7e81:GH, 7e81:GJ, 7e81:GK, 6gaw:AZ, 6gaz:AZ, 6h9c:f, 6n38:L, 7n6g:2M, 5nbl:G, 7nqh:AZ, 7nql:AZ, 7nsi:AZ, 7nsj:AZ, 6tf9:FP1, 6uxv:O, 6uxw:O, 6x89:A, 6ydw:AZ, 6z1h:C)
    AAAAAAAAAAAAAAAAAA
    		 ? GO:0003735 ... F1RME2 32602580
    2 6ydp:Ai
    (3.0)    		 BS02 >6ydp:AZ (identical to 8agv:1, 8agx:1, 8agz:1, 7cgo:GF, 7cgo:GH, 7cgo:GJ, 7cgo:GK, 7e81:GF, 7e81:GH, 7e81:GJ, 7e81:GK, 6gaw:AZ, 6gaz:AZ, 6h9c:f, 6n38:L, 7n6g:2M, 5nbl:G, 7nqh:AZ, 7nql:AZ, 7nsi:AZ, 7nsj:AZ, 6tf9:FP1, 6uxv:O, 6uxw:O, 6x89:A, 6ydw:AZ, 6z1h:C)
    AAAAAAAAAAAAAAAAAA
    		 ? N/A A0A4X1V2H3 32602580
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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