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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 3jbn:A3
    (4.7)    		 BS02 >3jbn:AC (identical to 3j79:C, 3jbo:AC, 3jbp:AC, 8tpu:AC, 5umd:C)
    agcacagucuuaacgauggaugucuugguuccuacagcgaugaaggccgc
agcaaaaugcgauacgcaaugaaaauugcagugacugaaucaucagaaug
cugaauguaaacuacaccaauucccugggaauagugguacuccuacagaa
a
............................................<<<<<<
<<<....>>>>.....(.<<<<.....>>..........>>>>..)...>
>>....<<.....>><<<<<<<<<<.>>>>>>..>>>>............
.
    		 ? GO:0000463 ... Q8IIB4 26432834
    2 3jbn:AF
    (4.7)    		 BS02 >3jbn:AC (identical to 3j79:C, 3jbo:AC, 3jbp:AC, 8tpu:AC, 5umd:C)
    agcacagucuuaacgauggaugucuugguuccuacagcgaugaaggccgc
agcaaaaugcgauacgcaaugaaaauugcagugacugaaucaucagaaug
cugaauguaaacuacaccaauucccugggaauagugguacuccuacagaa
a
............................................<<<<<<
<<<....>>>>.....(.<<<<.....>>..........>>>>..)...>
>>....<<.....>><<<<<<<<<<.>>>>>>..>>>>............
.
    		 ? GO:0003723 ... Q8I431 26432834
    3 3jbn:AL
    (4.7)    		 BS02 >3jbn:AC (identical to 3j79:C, 3jbo:AC, 3jbp:AC, 8tpu:AC, 5umd:C)
    agcacagucuuaacgauggaugucuugguuccuacagcgaugaaggccgc
agcaaaaugcgauacgcaaugaaaauugcagugacugaaucaucagaaug
cugaauguaaacuacaccaauucccugggaauagugguacuccuacagaa
a
............................................<<<<<<
<<<....>>>>.....(.<<<<.....>>..........>>>>..)...>
>>....<<.....>><<<<<<<<<<.>>>>>>..>>>>............
.
    		 ? GO:0003723 ... Q8IAX6 26432834
    4 3jbn:AP
    (4.7)    		 BS02 >3jbn:AC (identical to 3j79:C, 3jbo:AC, 3jbp:AC, 8tpu:AC, 5umd:C)
    agcacagucuuaacgauggaugucuugguuccuacagcgaugaaggccgc
agcaaaaugcgauacgcaaugaaaauugcagugacugaaucaucagaaug
cugaauguaaacuacaccaauucccugggaauagugguacuccuacagaa
a
............................................<<<<<<
<<<....>>>>.....(.<<<<.....>>..........>>>>..)...>
>>....<<.....>><<<<<<<<<<.>>>>>>..>>>>............
.
    		 ? GO:0002181 ... C0H4A6 26432834
    5 3jbn:AW
    (4.7)    		 BS02 >3jbn:AC (identical to 3j79:C, 3jbo:AC, 3jbp:AC, 8tpu:AC, 5umd:C)
    agcacagucuuaacgauggaugucuugguuccuacagcgaugaaggccgc
agcaaaaugcgauacgcaaugaaaauugcagugacugaaucaucagaaug
cugaauguaaacuacaccaauucccugggaauagugguacuccuacagaa
a
............................................<<<<<<
<<<....>>>>.....(.<<<<.....>>..........>>>>..)...>
>>....<<.....>><<<<<<<<<<.>>>>>>..>>>>............
.
    		 ? GO:0003735 ... Q8IDI5 26432834
    6 3jbn:AY
    (4.7)    		 BS02 >3jbn:AC (identical to 3j79:C, 3jbo:AC, 3jbp:AC, 8tpu:AC, 5umd:C)
    agcacagucuuaacgauggaugucuugguuccuacagcgaugaaggccgc
agcaaaaugcgauacgcaaugaaaauugcagugacugaaucaucagaaug
cugaauguaaacuacaccaauucccugggaauagugguacuccuacagaa
a
............................................<<<<<<
<<<....>>>>.....(.<<<<.....>>..........>>>>..)...>
>>....<<.....>><<<<<<<<<<.>>>>>>..>>>>............
.
    		 ? GO:0003735 ... Q8IE82 26432834
    7 3jbn:AZ
    (4.7)    		 BS02 >3jbn:AC (identical to 3j79:C, 3jbo:AC, 3jbp:AC, 8tpu:AC, 5umd:C)
    agcacagucuuaacgauggaugucuugguuccuacagcgaugaaggccgc
agcaaaaugcgauacgcaaugaaaauugcagugacugaaucaucagaaug
cugaauguaaacuacaccaauucccugggaauagugguacuccuacagaa
a
............................................<<<<<<
<<<....>>>>.....(.<<<<.....>>..........>>>>..)...>
>>....<<.....>><<<<<<<<<<.>>>>>>..>>>>............
.
    		 ? GO:0002181 ... O77364 26432834
    8 3jbn:Ac
    (4.7)    		 BS02 >3jbn:AC (identical to 3j79:C, 3jbo:AC, 3jbp:AC, 8tpu:AC, 5umd:C)
    agcacagucuuaacgauggaugucuugguuccuacagcgaugaaggccgc
agcaaaaugcgauacgcaaugaaaauugcagugacugaaucaucagaaug
cugaauguaaacuacaccaauucccugggaauagugguacuccuacagaa
a
............................................<<<<<<
<<<....>>>>.....(.<<<<.....>>..........>>>>..)...>
>>....<<.....>><<<<<<<<<<.>>>>>>..>>>>............
.
    		 ? GO:0003723 ... C0H4L5 26432834
    9 3jbn:Ae
    (4.7)    		 BS02 >3jbn:AC (identical to 3j79:C, 3jbo:AC, 3jbp:AC, 8tpu:AC, 5umd:C)
    agcacagucuuaacgauggaugucuugguuccuacagcgaugaaggccgc
agcaaaaugcgauacgcaaugaaaauugcagugacugaaucaucagaaug
cugaauguaaacuacaccaauucccugggaauagugguacuccuacagaa
a
............................................<<<<<<
<<<....>>>>.....(.<<<<.....>>..........>>>>..)...>
>>....<<.....>><<<<<<<<<<.>>>>>>..>>>>............
.
    		 ? GO:0003735 ... C0H4H3 26432834
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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