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BioLiP Library
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3r33:A (2.09) BS01 6ME 1.5.1.3 GO:0004146 ... P0ABQ4 22246400 MOAD: Ki=0.8uM
    BindingDB: Ki=1100nM
    2 3r33:A (2.09) BS02 NDP 1.5.1.3 GO:0004146 ... P0ABQ4 22246400
    3 3r33:A (2.09) BS03 CA 1.5.1.3 GO:0004146 ... P0ABQ4 22246400
    4 3r33:A (2.09) BS04 CA 1.5.1.3 GO:0004146 ... P0ABQ4 22246400
    5 3r33:A (2.09) BS05 CA 1.5.1.3 GO:0004146 ... P0ABQ4 22246400
    6 3r33:A (2.09) BS06 CA 1.5.1.3 GO:0004146 ... P0ABQ4 22246400
    7 3r33:A (2.09) BS07 CA 1.5.1.3 GO:0004146 ... P0ABQ4 22246400
    8 3r33:A (2.09) BS08 CA 1.5.1.3 GO:0004146 ... P0ABQ4 22246400
    9 3r33:A (2.09) BS09 CA 1.5.1.3 GO:0004146 ... P0ABQ4 22246400
    10 3r33:A (2.09) BS10 CA 1.5.1.3 GO:0004146 ... P0ABQ4 22246400
    11 3r33:A (2.09) BS11 CA 1.5.1.3 GO:0004146 ... P0ABQ4 22246400
    12 3r33:A (2.09) BS12 CA 1.5.1.3 GO:0004146 ... P0ABQ4 22246400
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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