BioLiP

Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.

Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.

Click Site # to view the binding site structure. Hover over Site # to view the binding residues.

The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.

Hover over EC number to view the full name of enzymatic activity.

Hover over GO terms to view all GO terms.

Hover over UniProt to view the protein name.

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#	PDB (resolution)	Site #	RNA sequence	EC number	GO terms	UniProt	PubMed
1	8c9a:2 (4.86)	BS01	>8c9a:A gcguacacgguggaugcccuggcagucagaggcgaugaaggacgugcuaa ucugcgauaagcgucgguaaggugauaugaaccguuauaaccggcgauuu ccgaauggggaaacccaguguguuucgacacacuaucauuaacugaaucc auagguuaaugaggcgaaccgggggaacugaaacaucuaaguaccccgag gaaaagaaaucaaccgagauucccccaguagcggcgagcgaacggggagc agcccagagccugaaucaguguguguguuaguggaagcgucuggaaaggc gcgcgauacagggugacagccccguacacaaaaaugcacaugcugugagc ucgaugaguagggcgggacacgugguauccugucugaauauggggggacc auccuccaaggcuaaauacuccugacugaccgauagugaaccaguaccgu gagggaaaggcgaaaagaaccccggcgaggggagugaaaaagaaccugaa accguguacguacuuauauucuguagcaagguuaaccgaauaggggagcc gaagggaaaccgaaguugcaggguauuuccuguccaacguuaaucggggc agggugagucgaaacagguuaauauuccuguacuugguaucaaaucguac .<<<<<<<<<<....<<<..<<<<<<<<<<<<<......<<<<<<.[..( ((.>>>.....<<<<<<<..<<<)))..].>>>......>>>>>>>...> >>....<<<....>>><<<<<<<....>>>>>>>.<<<<<<<<<...... ...>>>>>>>>>.>>...<<<<<<...................>>>>>.> ...................<<<<<......<<.....>>.....>>>>>. .<<<..<<<<......<<<<<<<<<<<<<.<<<...<<<<<......>>> >>((......<<<.....))>>>...>>>...>>>>>>>>>>>>>...>> >>........<<<.<<<<.........>>>>.>>>......<<<<<.... .>>>.>>..>>>......>>.>>>>>>>.>>...............<<.. ..>>....>>.........<<<<.....>>>>.............>.... >>>>>>>>>>.....<<<<<<<<<<<<...<....<<.....>>....>. ...<<....>>...>>>>>>>>>>>>..<<<<<<...<<.....>>.>>> >>>....<<(...<<<<<........>>>>>>><<<<..>>>>...)...	?	GO:0002181 ...	P0A7P5	36797249
2	8c9a:E (4.86)	BS01	>8c9a:A gcguacacgguggaugcccuggcagucagaggcgaugaaggacgugcuaa ucugcgauaagcgucgguaaggugauaugaaccguuauaaccggcgauuu ccgaauggggaaacccaguguguuucgacacacuaucauuaacugaaucc auagguuaaugaggcgaaccgggggaacugaaacaucuaaguaccccgag gaaaagaaaucaaccgagauucccccaguagcggcgagcgaacggggagc agcccagagccugaaucaguguguguguuaguggaagcgucuggaaaggc gcgcgauacagggugacagccccguacacaaaaaugcacaugcugugagc ucgaugaguagggcgggacacgugguauccugucugaauauggggggacc auccuccaaggcuaaauacuccugacugaccgauagugaaccaguaccgu gagggaaaggcgaaaagaaccccggcgaggggagugaaaaagaaccugaa accguguacguacuuauauucuguagcaagguuaaccgaauaggggagcc gaagggaaaccgaaguugcaggguauuuccuguccaacguuaaucggggc agggugagucgaaacagguuaauauuccuguacuugguaucaaaucguac .<<<<<<<<<<....<<<..<<<<<<<<<<<<<......<<<<<<.[..( ((.>>>.....<<<<<<<..<<<)))..].>>>......>>>>>>>...> >>....<<<....>>><<<<<<<....>>>>>>>.<<<<<<<<<...... ...>>>>>>>>>.>>...<<<<<<...................>>>>>.> ...................<<<<<......<<.....>>.....>>>>>. .<<<..<<<<......<<<<<<<<<<<<<.<<<...<<<<<......>>> >>((......<<<.....))>>>...>>>...>>>>>>>>>>>>>...>> >>........<<<.<<<<.........>>>>.>>>......<<<<<.... .>>>.>>..>>>......>>.>>>>>>>.>>...............<<.. ..>>....>>.........<<<<.....>>>>.............>.... >>>>>>>>>>.....<<<<<<<<<<<<...<....<<.....>>....>. ...<<....>>...>>>>>>>>>>>>..<<<<<<...<<.....>>.>>> >>>....<<(...<<<<<........>>>>>>><<<<..>>>>...)...	?	GO:0001070 ...	P60723	36797249
3	8c9a:S (4.86)	BS01	>8c9a:A gcguacacgguggaugcccuggcagucagaggcgaugaaggacgugcuaa ucugcgauaagcgucgguaaggugauaugaaccguuauaaccggcgauuu ccgaauggggaaacccaguguguuucgacacacuaucauuaacugaaucc auagguuaaugaggcgaaccgggggaacugaaacaucuaaguaccccgag gaaaagaaaucaaccgagauucccccaguagcggcgagcgaacggggagc agcccagagccugaaucaguguguguguuaguggaagcgucuggaaaggc gcgcgauacagggugacagccccguacacaaaaaugcacaugcugugagc ucgaugaguagggcgggacacgugguauccugucugaauauggggggacc auccuccaaggcuaaauacuccugacugaccgauagugaaccaguaccgu gagggaaaggcgaaaagaaccccggcgaggggagugaaaaagaaccugaa accguguacguacuuauauucuguagcaagguuaaccgaauaggggagcc gaagggaaaccgaaguugcaggguauuuccuguccaacguuaaucggggc agggugagucgaaacagguuaauauuccuguacuugguaucaaaucguac .<<<<<<<<<<....<<<..<<<<<<<<<<<<<......<<<<<<.[..( ((.>>>.....<<<<<<<..<<<)))..].>>>......>>>>>>>...> >>....<<<....>>><<<<<<<....>>>>>>>.<<<<<<<<<...... ...>>>>>>>>>.>>...<<<<<<...................>>>>>.> ...................<<<<<......<<.....>>.....>>>>>. .<<<..<<<<......<<<<<<<<<<<<<.<<<...<<<<<......>>> >>((......<<<.....))>>>...>>>...>>>>>>>>>>>>>...>> >>........<<<.<<<<.........>>>>.>>>......<<<<<.... .>>>.>>..>>>......>>.>>>>>>>.>>...............<<.. ..>>....>>.........<<<<.....>>>>.............>.... >>>>>>>>>>.....<<<<<<<<<<<<...<....<<.....>>....>. ...<<....>>...>>>>>>>>>>>>..<<<<<<...<<.....>>.>>> >>>....<<(...<<<<<........>>>>>>><<<<..>>>>...)...	?	GO:0002181 ...	P61175	36797249
4	8c9a:T (4.86)	BS01	>8c9a:A gcguacacgguggaugcccuggcagucagaggcgaugaaggacgugcuaa ucugcgauaagcgucgguaaggugauaugaaccguuauaaccggcgauuu ccgaauggggaaacccaguguguuucgacacacuaucauuaacugaaucc auagguuaaugaggcgaaccgggggaacugaaacaucuaaguaccccgag gaaaagaaaucaaccgagauucccccaguagcggcgagcgaacggggagc agcccagagccugaaucaguguguguguuaguggaagcgucuggaaaggc gcgcgauacagggugacagccccguacacaaaaaugcacaugcugugagc ucgaugaguagggcgggacacgugguauccugucugaauauggggggacc auccuccaaggcuaaauacuccugacugaccgauagugaaccaguaccgu gagggaaaggcgaaaagaaccccggcgaggggagugaaaaagaaccugaa accguguacguacuuauauucuguagcaagguuaaccgaauaggggagcc gaagggaaaccgaaguugcaggguauuuccuguccaacguuaaucggggc agggugagucgaaacagguuaauauuccuguacuugguaucaaaucguac .<<<<<<<<<<....<<<..<<<<<<<<<<<<<......<<<<<<.[..( ((.>>>.....<<<<<<<..<<<)))..].>>>......>>>>>>>...> >>....<<<....>>><<<<<<<....>>>>>>>.<<<<<<<<<...... ...>>>>>>>>>.>>...<<<<<<...................>>>>>.> ...................<<<<<......<<.....>>.....>>>>>. .<<<..<<<<......<<<<<<<<<<<<<.<<<...<<<<<......>>> >>((......<<<.....))>>>...>>>...>>>>>>>>>>>>>...>> >>........<<<.<<<<.........>>>>.>>>......<<<<<.... .>>>.>>..>>>......>>.>>>>>>>.>>...............<<.. ..>>....>>.........<<<<.....>>>>.............>.... >>>>>>>>>>.....<<<<<<<<<<<<...<....<<.....>>....>. ...<<....>>...>>>>>>>>>>>>..<<<<<<...<<.....>>.>>> >>>....<<(...<<<<<........>>>>>>><<<<..>>>>...)...	?	GO:0000027 ...	P0ADZ0	36797249
5	8c9a:U (4.86)	BS01	>8c9a:A gcguacacgguggaugcccuggcagucagaggcgaugaaggacgugcuaa ucugcgauaagcgucgguaaggugauaugaaccguuauaaccggcgauuu ccgaauggggaaacccaguguguuucgacacacuaucauuaacugaaucc auagguuaaugaggcgaaccgggggaacugaaacaucuaaguaccccgag gaaaagaaaucaaccgagauucccccaguagcggcgagcgaacggggagc agcccagagccugaaucaguguguguguuaguggaagcgucuggaaaggc gcgcgauacagggugacagccccguacacaaaaaugcacaugcugugagc ucgaugaguagggcgggacacgugguauccugucugaauauggggggacc auccuccaaggcuaaauacuccugacugaccgauagugaaccaguaccgu gagggaaaggcgaaaagaaccccggcgaggggagugaaaaagaaccugaa accguguacguacuuauauucuguagcaagguuaaccgaauaggggagcc gaagggaaaccgaaguugcaggguauuuccuguccaacguuaaucggggc agggugagucgaaacagguuaauauuccuguacuugguaucaaaucguac .<<<<<<<<<<....<<<..<<<<<<<<<<<<<......<<<<<<.[..( ((.>>>.....<<<<<<<..<<<)))..].>>>......>>>>>>>...> >>....<<<....>>><<<<<<<....>>>>>>>.<<<<<<<<<...... ...>>>>>>>>>.>>...<<<<<<...................>>>>>.> ...................<<<<<......<<.....>>.....>>>>>. .<<<..<<<<......<<<<<<<<<<<<<.<<<...<<<<<......>>> >>((......<<<.....))>>>...>>>...>>>>>>>>>>>>>...>> >>........<<<.<<<<.........>>>>.>>>......<<<<<.... .>>>.>>..>>>......>>.>>>>>>>.>>...............<<.. ..>>....>>.........<<<<.....>>>>.............>.... >>>>>>>>>>.....<<<<<<<<<<<<...<....<<.....>>....>. ...<<....>>...>>>>>>>>>>>>..<<<<<<...<<.....>>.>>> >>>....<<(...<<<<<........>>>>>>><<<<..>>>>...)...	?	GO:0000027 ...	P60624	36797249
6	8c9a:Y (4.86)	BS01	>8c9a:A gcguacacgguggaugcccuggcagucagaggcgaugaaggacgugcuaa ucugcgauaagcgucgguaaggugauaugaaccguuauaaccggcgauuu ccgaauggggaaacccaguguguuucgacacacuaucauuaacugaaucc auagguuaaugaggcgaaccgggggaacugaaacaucuaaguaccccgag gaaaagaaaucaaccgagauucccccaguagcggcgagcgaacggggagc agcccagagccugaaucaguguguguguuaguggaagcgucuggaaaggc gcgcgauacagggugacagccccguacacaaaaaugcacaugcugugagc ucgaugaguagggcgggacacgugguauccugucugaauauggggggacc auccuccaaggcuaaauacuccugacugaccgauagugaaccaguaccgu gagggaaaggcgaaaagaaccccggcgaggggagugaaaaagaaccugaa accguguacguacuuauauucuguagcaagguuaaccgaauaggggagcc gaagggaaaccgaaguugcaggguauuuccuguccaacguuaaucggggc agggugagucgaaacagguuaauauuccuguacuugguaucaaaucguac .<<<<<<<<<<....<<<..<<<<<<<<<<<<<......<<<<<<.[..( ((.>>>.....<<<<<<<..<<<)))..].>>>......>>>>>>>...> >>....<<<....>>><<<<<<<....>>>>>>>.<<<<<<<<<...... ...>>>>>>>>>.>>...<<<<<<...................>>>>>.> ...................<<<<<......<<.....>>.....>>>>>. .<<<..<<<<......<<<<<<<<<<<<<.<<<...<<<<<......>>> >>((......<<<.....))>>>...>>>...>>>>>>>>>>>>>...>> >>........<<<.<<<<.........>>>>.>>>......<<<<<.... .>>>.>>..>>>......>>.>>>>>>>.>>...............<<.. ..>>....>>.........<<<<.....>>>>.............>.... >>>>>>>>>>.....<<<<<<<<<<<<...<....<<.....>>....>. ...<<....>>...>>>>>>>>>>>>..<<<<<<...<<.....>>.>>> >>>....<<(...<<<<<........>>>>>>><<<<..>>>>...)...	?	GO:0000027 ...	P0A7M6	36797249