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BioLiP
Download all results in tab-seperated text for 6 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 4csu:2
    (5.5)    		 BS01 >4csu:A (identical to 3j8g:A, 4v5h:BA)
    gcugcggccguagcgcgguggucccaccugaccccaugccgaacucagaa
gugaaacgccguagcgccgaugguaguguggggucuccccaugcgagagu
agggaacugccaggc
.<<<<<<.....<<<<<<<<....<<<<<<<.............>>>>..
>>>...>>>>>>.>>.<<.....<.<<<<<<<<...>>>>>>>>...>..
.>>...>>>>.>>..
    		 ? GO:0000027 ... P0AG51 24844575
    2 4csu:9
    (5.5)    		 BS01 >4csu:A (identical to 3j8g:A, 4v5h:BA)
    gcugcggccguagcgcgguggucccaccugaccccaugccgaacucagaa
gugaaacgccguagcgccgaugguaguguggggucuccccaugcgagagu
agggaacugccaggc
.<<<<<<.....<<<<<<<<....<<<<<<<.............>>>>..
>>>...>>>>>>.>>.<<.....<.<<<<<<<<...>>>>>>>>...>..
.>>...>>>>.>>..
    		 3.6.5.- GO:0000027 ... P42641 24844575
    3 4csu:F
    (5.5)    		 BS01 >4csu:A (identical to 3j8g:A, 4v5h:BA)
    gcugcggccguagcgcgguggucccaccugaccccaugccgaacucagaa
gugaaacgccguagcgccgaugguaguguggggucuccccaugcgagagu
agggaacugccaggc
.<<<<<<.....<<<<<<<<....<<<<<<<.............>>>>..
>>>...>>>>>>.>>.<<.....<.<<<<<<<<...>>>>>>>>...>..
.>>...>>>>.>>..
    		 ? GO:0000027 ... P62399 24844575
    4 4csu:M
    (5.5)    		 BS01 >4csu:A (identical to 3j8g:A, 4v5h:BA)
    gcugcggccguagcgcgguggucccaccugaccccaugccgaacucagaa
gugaaacgccguagcgccgaugguaguguggggucuccccaugcgagagu
agggaacugccaggc
.<<<<<<.....<<<<<<<<....<<<<<<<.............>>>>..
>>>...>>>>>>.>>.<<.....<.<<<<<<<<...>>>>>>>>...>..
.>>...>>>>.>>..
    		 ? GO:0000027 ... P0ADY7 24844575
    5 4csu:O
    (5.5)    		 BS01 >4csu:A (identical to 3j8g:A, 4v5h:BA)
    gcugcggccguagcgcgguggucccaccugaccccaugccgaacucagaa
gugaaacgccguagcgccgaugguaguguggggucuccccaugcgagagu
agggaacugccaggc
.<<<<<<.....<<<<<<<<....<<<<<<<.............>>>>..
>>>...>>>>>>.>>.<<.....<.<<<<<<<<...>>>>>>>>...>..
.>>...>>>>.>>..
    		 ? GO:0002181 ... P0C018 24844575
    6 4csu:W
    (5.5)    		 BS01 >4csu:A (identical to 3j8g:A, 4v5h:BA)
    gcugcggccguagcgcgguggucccaccugaccccaugccgaacucagaa
gugaaacgccguagcgccgaugguaguguggggucuccccaugcgagagu
agggaacugccaggc
.<<<<<<.....<<<<<<<<....<<<<<<<.............>>>>..
>>>...>>>>>>.>>.<<.....<.<<<<<<<<...>>>>>>>>...>..
.>>...>>>>.>>..
    		 ? GO:0000027 ... P68919 24844575
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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