Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 4baq:B
    (1.89)    		 BS01 >4baq:A (identical to 1a3b:L, 1a3e:L, 1a5g:L, 1a61:L, 1abj:L, 1ai8:L, 1aix:L, 1awf:L, 4ax9:L, 4bak:A, 4bam:A, 4ban:A, 4bao:A, 2bvr:L, 2bvs:L, 2bvx:L, 2bxt:L, 2bxu:L, 1c4y:1, 6cym:B, 3da9:A, 3dhk:L, 4dih:L, 4dii:L, 3dux:L, 1eb1:L, 3eq0:L, 3f68:L, 2gde:L, 1h8i:L, 1hao:L, 1hap:L, 1hbt:L, 1hlt:L, 1hlt:J, 4i7y:L, 1k21:L, 4loy:L, 4lxb:L, 7mj5:D, 7mj5:F, 7mj5:K, 1nrs:L, 1oyt:L, 3p17:L, 2pks:A, 3po1:A, 2pw8:L, 1qur:L, 1riw:A, 3s7h:A, 1sg8:A, 1sg8:D, 6t54:L, 1thp:A, 3u8r:L, 3u8t:L, 4ufd:L, 4uff:L, 1uvs:L, 1vr1:L, 1vzq:L, 1ype:L, 1ypg:L, 1ypj:L, 1ypk:L, 1ypl:L, 1ypm:L, 6z8v:L, 6z8w:L, 2zfq:L, 2zg0:L, 2zgb:L, 2zgx:L, 2zhe:L, 2zhf:L, 2zhw:L, 2zi2:L, 7zkm:L, 7zko:L, 2zo3:L, 6zug:L, 6zuh:L, 6zun:L, 6zuu:L, 6zuw:L, 6zux:L, 6zv7:L, 6zv8:L)
    ADCGLRPLFEKKSLEDKTERELLESYI
    		 3.4.21.5 GO:0004252 ... P00734 23290007
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218