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BioLiP
Download all results in tab-seperated text for 1 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (resolution)
    Site
    #
    Peptide
    sequence
    EC
    number
    GO
    terms
    UniProt PubMed Binding
    affinity
    1 2m1e:B
    (-1.00)
    BS01 >2m1e:A (identical to 7ac4:A, 1ai0:A, 1ai0:C, 1ai0:E, 1ai0:G, 1ai0:I, 1ai0:K, 1aiy:A, 1aiy:C, 1aiy:E, 1aiy:G, 1aiy:I, 1aiy:K, 2aiy:A, 2aiy:C, 2aiy:E, 2aiy:G, 2aiy:I, 2aiy:K, 3aiy:A, 3aiy:C, 3aiy:E, 3aiy:G, 3aiy:I, 3aiy:K, 4aiy:A, 4aiy:C, 4aiy:E, 4aiy:G, 4aiy:I, 4aiy:K, 5aiy:A, 5aiy:C, 5aiy:E, 5aiy:G, 5aiy:I, 5aiy:K, 1b17:A, 1b18:A, 1b19:A, 1b2a:A, 1b2b:A, 1b2c:A, 1b2d:A, 1b2e:A, 1b2f:A, 1b2g:A, 6b70:a, 1b9e:A, 1b9e:C, 1ben:A, 5bqq:A, 5bqq:C, 5bqq:E, 5bqq:G, 5bqq:I, 5bqq:K, 5bts:A, 3bxq:A, 3bxq:C, 6ce7:N, 6ce9:K, 6ce9:N, 6ceb:K, 6ceb:N, 5cny:A, 5cny:C, 5co2:A, 5co2:C, 5co6:A, 5co6:C, 5co9:A, 5co9:C, 4cy7:A, 4cy7:C, 5d52:A, 5d53:A, 5d54:A, 5d5e:A, 5e7w:A, 5e7w:C, 2efa:A, 5en9:A, 5ena:A, 1ev6:A, 1ev6:E, 4eww:A, 4eww:C, 4ewx:A, 4ewx:C, 4ewz:A, 4ewz:C, 3exx:A, 3exx:C, 4ex0:A, 4ex0:C, 4ex1:A, 4ex1:C, 4exx:A, 4exx:C, 4ey1:A, 4ey1:C, 4ey9:A, 4ey9:C, 4eyd:A, 4eyd:C, 4eyn:A, 4eyn:C, 4eyp:A, 4eyp:C, 4f0n:A, 4f0n:C, 4f0o:A, 4f0o:C, 4f1a:A, 4f1a:C, 4f1b:A, 4f1b:C, 4f1c:A, 4f1c:C, 4f1d:A, 4f1d:C, 4f1f:A, 4f1f:C, 4f1g:A, 4f1g:C, 4f4t:A, 4f4t:C, 4f4v:A, 4f4v:C, 4f51:A, 4f51:C, 4f8f:A, 4f8f:C, 5fb6:A, 4fg3:A, 4fg3:C, 3fhp:A, 3fhp:C, 4fka:A, 4fka:C, 1fu2:A, 1fu2:C, 1fu2:E, 1fu2:G, 1fub:A, 1fub:C, 2g4m:A, 1g7a:A, 1g7a:E, 1g7b:A, 1g7b:E, 4gbc:C, 4gbi:C, 4gbk:C, 4gbl:C, 4gbn:C, 6gnq:A, 6gnq:C, 6gnq:I, 6gnq:S, 8gsg:A, 8gsg:C, 1guj:A, 1guj:C, 8guy:A, 8guy:C, 6h3m:A, 6h3m:C, 6h3m:I, 6h3m:K, 6h3m:R, 2h67:A, 2hh4:A, 2hho:A, 1hiq:A, 1hit:A, 2hiu:A, 1hls:A, 6hn5:A, 5hpr:A, 5hrq:A, 5hrq:C, 5hrq:G, 5hrq:I, 5hrq:K, 8hsk:A, 3i3z:A, 3i40:A, 3ilg:A, 3ilg:C, 3inc:A, 3inc:C, 3ins:A, 3ins:C, 4ins:A, 4ins:C, 7ins:A, 7ins:C, 7ins:E, 9ins:A, 3ir0:A, 3ir0:C, 3ir0:E, 3ir0:G, 3ir0:I, 3ir0:K, 3ir0:M, 3ir0:O, 3ir0:R, 3ir0:T, 3ir0:V, 3ir0:X, 4iuz:A, 1iza:A, 1iza:C, 1izb:A, 1izb:C, 1jco:A, 6jk8:C, 2jmn:A, 3jsd:A, 3jsd:C, 2jv1:A, 2k91:A, 2k9r:A, 2kjj:A, 2kju:A, 1kmf:A, 2kqq:A, 2l1y:A, 5lis:A, 1lph:A, 1lph:C, 2m1d:A, 2m2m:A, 2m2n:A, 2m2o:A, 2m2p:A, 1m5a:A, 1m5a:C, 5mam:I, 5mam:O, 7md4:U, 7md5:S, 7md5:O, 7md5:Q, 7md5:U, 1mhi:A, 2mli:A, 1mpj:C, 2mpg:A, 2mpi:A, 1mso:A, 1mso:C, 3mth:C, 2mvc:A, 2mvd:A, 2n2v:A, 2n2w:A, 2n2x:A, 4nib:A, 2om1:E, 2om1:I, 2om1:Q, 2om1:S, 2om1:U, 2omi:A, 2omi:E, 8onk:I, 8onk:D, 3p2x:A, 3p2x:C, 3p33:A, 3p33:C, 3p33:E, 3p33:G, 6p4z:A, 7pg0:C, 7pg0:E, 7pg0:I, 7pg2:C, 7pg2:E, 7pg2:I, 7pg3:C, 7pg3:E, 7pg3:I, 7pg4:C, 7pg4:I, 1q4v:A, 1q4v:C, 3q6e:C, 7qac:A, 1qiy:A, 1qiy:C, 1qiy:E, 1qiy:G, 1qiy:I, 1qiy:K, 1qiz:A, 1qiz:C, 1qiz:E, 1qiz:G, 1qiz:I, 1qiz:K, 7qid:E, 7qid:K, 7qid:I, 1qj0:C, 2r35:C, 2rn5:A, 3rov:A, 3rov:C, 3rov:E, 3rov:G, 3rov:I, 3rov:K, 3rto:A, 3rto:C, 4rxw:A, 4rxw:C, 6s34:A, 7s4y:A, 7s4y:C, 1sf1:A, 7sl4:E, 7sl4:F, 7sl6:C, 7sl6:D, 6sof:G, 6sof:E, 6sof:K, 6sof:I, 1t1k:A, 1t1p:A, 1t1q:A, 3t2a:A, 2tci:C, 6tc2:I, 1trz:A, 1trz:C, 3tt8:A, 3tt8:C, 1tyl:A, 7u6e:A, 4une:A, 4une:C, 5uqa:A, 5uqa:I, 3v1g:A, 3v1g:C, 7v3p:E, 3w7y:A, 3w7y:C, 3w7z:A, 3w7z:C, 3w80:A, 3w80:C, 3w80:E, 3w80:G, 1wav:A, 1wav:C, 1wav:E, 1wav:G, 1wav:I, 1wav:K, 6x4x:A, 4xc4:A, 4xc4:C, 1xgl:A, 7yq3:A, 7yq4:A, 7yq5:A, 8z4b:A, 8z4b:C, 7z5q:A, 6z7w:K, 6z7w:M, 6z7w:O, 6z7y:E, 6z7y:G, 6z7z:E, 6z7z:G, 1zeg:A, 1zeg:C, 1zeh:A, 1zeh:C, 1zni:A, 1zni:C, 1znj:A, 1znj:E, 1znj:I, 1znj:K, 2zpp:A)
    GIVEQCCTSICSLYQLENYCN
    ? GO:0005179 ... P01308 23404086

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218