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BioLiP
Download all results in tab-seperated text for 3 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7ac7:5
    (3.08)    		 BS02 >7ac7:4 (identical to 7abz:4, 7acj:4, 7acr:4, 6q98:4, 6q9a:4, 8vs9:TMRN, 8vsa:TMRN)
    ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg
aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga
aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag
ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg
cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu
uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu
aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc
gccagcuccacca
<<<<<<<.............<<<<<<<............<<...<.....
.((...<<<....))........>>>............<<.......>>.
......<.<<...<.............>....>>.>....<...<<<...
<<..........>>...>>>.......>......................
..............<<<.......................>>>.....<<
<.......<<<...(....>>>.......>>>..............)...
.....>......>>...........>>>>>>>...<<<<<.......>>>
>>>>>>>>>....
    		 ? GO:0003723 ... P0A832 34389707
    2 7ac7:M
    (3.08)    		 BS03 >7ac7:4 (identical to 7abz:4, 7acj:4, 7acr:4, 6q98:4, 6q9a:4, 8vs9:TMRN, 8vsa:TMRN)
    ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg
aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga
aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag
ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg
cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu
uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu
aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc
gccagcuccacca
<<<<<<<.............<<<<<<<............<<...<.....
.((...<<<....))........>>>............<<.......>>.
......<.<<...<.............>....>>.>....<...<<<...
<<..........>>...>>>.......>......................
..............<<<.......................>>>.....<<
<.......<<<...(....>>>.......>>>..............)...
.....>......>>...........>>>>>>>...<<<<<.......>>>
>>>>>>>>>....
    		 ? GO:0000027 ... P0ADY7 34389707
    3 7ac7:h
    (3.08)    		 BS02 >7ac7:4 (identical to 7abz:4, 7acj:4, 7acr:4, 6q98:4, 6q9a:4, 8vs9:TMRN, 8vsa:TMRN)
    ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg
aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga
aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag
ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg
cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu
uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu
aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc
gccagcuccacca
<<<<<<<.............<<<<<<<............<<...<.....
.((...<<<....))........>>>............<<.......>>.
......<.<<...<.............>....>>.>....<...<<<...
<<..........>>...>>>.......>......................
..............<<<.......................>>>.....<<
<.......<<<...(....>>>.......>>>..............)...
.....>......>>...........>>>>>>>...<<<<<.......>>>
>>>>>>>>>....
    		 ? GO:0003676 ... P0A7V3 34389707
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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