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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		RNA
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 7b9v:A
    (2.8)    		 BS01 >7b9v:2
    aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaac
aagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggac
gggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggaguc
guucuugacuuuuacuuuggucgcuugauguuucucuucccguucg
............................................<<<<<<
<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<
<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<
<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>>
    		 ? GO:0000244 ... P33334 33705709
    2 7b9v:D
    (2.8)    		 BS01 >7b9v:2
    aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaac
aagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggac
gggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggaguc
guucuugacuuuuacuuuggucgcuugauguuucucuucccguucg
............................................<<<<<<
<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<
<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<
<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>>
    		 N/A GO:0000398 ... N/A 33705709
    3 7b9v:F
    (2.8)    		 BS01 >7b9v:2
    aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaac
aagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggac
gggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggaguc
guucuugacuuuuacuuuggucgcuugauguuucucuucccguucg
............................................<<<<<<
<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<
<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<
<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>>
    		 N/A N/A N/A 33705709
    4 7b9v:G
    (2.8)    		 BS01 >7b9v:2
    aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaac
aagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggac
gggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggaguc
guucuugacuuuuacuuuggucgcuugauguuucucuucccguucg
............................................<<<<<<
<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<
<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<
<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>>
    		 N/A GO:0000350 ... N/A 33705709
    5 7b9v:K
    (2.8)    		 BS01 >7b9v:2
    aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaac
aagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggac
gggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggaguc
guucuugacuuuuacuuuggucgcuugauguuucucuucccguucg
............................................<<<<<<
<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<
<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<
<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>>
    		 N/A GO:0000398 ... N/A 33705709
    6 7b9v:M
    (2.8)    		 BS01 >7b9v:2
    aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaac
aagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggac
gggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggaguc
guucuugacuuuuacuuuggucgcuugauguuucucuucccguucg
............................................<<<<<<
<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<
<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<
<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>>
    		 ? GO:0003676 ... N/A 33705709
    7 7b9v:N
    (2.8)    		 BS01 >7b9v:2
    aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaac
aagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggac
gggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggaguc
guucuugacuuuuacuuuggucgcuugauguuucucuucccguucg
............................................<<<<<<
<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<
<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<
<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>>
    		 N/A GO:0003723 ... N/A 33705709
    8 7b9v:P
    (2.8)    		 BS01 >7b9v:2
    aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaac
aagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggac
gggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggaguc
guucuugacuuuuacuuuggucgcuugauguuucucuucccguucg
............................................<<<<<<
<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<
<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<
<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>>
    		 N/A GO:0000398 ... N/A 33705709
    9 7b9v:W
    (2.8)    		 BS01 >7b9v:2
    aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaac
aagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggac
gggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggaguc
guucuugacuuuuacuuuggucgcuugauguuucucuucccguucg
............................................<<<<<<
<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<
<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<
<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>>
    		 ? N/A N/A 33705709
    10 7b9v:Y
    (2.8)    		 BS01 >7b9v:2
    aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaac
aagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggac
gggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggaguc
guucuugacuuuuacuuuggucgcuugauguuucucuucccguucg
............................................<<<<<<
<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<
<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<
<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>>
    		 ? GO:0003676 ... N/A 33705709
    11 7b9v:k
    (2.8)    		 BS01 >7b9v:2
    aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaac
aagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggac
gggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggaguc
guucuugacuuuuacuuuggucgcuugauguuucucuucccguucg
............................................<<<<<<
<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<
<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<
<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>>
    		 ? GO:0000243 ... P40018 33705709
    12 7b9v:l
    (2.8)    		 BS01 >7b9v:2
    aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaac
aagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggac
gggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggaguc
guucuugacuuuuacuuuggucgcuugauguuucucuucccguucg
............................................<<<<<<
<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<
<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<
<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>>
    		 ? GO:0000243 ... Q02260 33705709
    13 7b9v:m
    (2.8)    		 BS01 >7b9v:2
    aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaac
aagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggac
gggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggaguc
guucuugacuuuuacuuuggucgcuugauguuucucuucccguucg
............................................<<<<<<
<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<
<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<
<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>>
    		 ? GO:0000243 ... Q06217 33705709
    14 7b9v:n
    (2.8)    		 BS01 >7b9v:2
    aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaac
aagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggac
gggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggaguc
guucuugacuuuuacuuuggucgcuugauguuucucuucccguucg
............................................<<<<<<
<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<
<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<
<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>>
    		 ? GO:0000243 ... P43321 33705709
    15 7b9v:p
    (2.8)    		 BS01 >7b9v:2
    aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaac
aagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggac
gggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggaguc
guucuugacuuuuacuuuggucgcuugauguuucucuucccguucg
............................................<<<<<<
<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<
<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<
<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>>
    		 ? GO:0000243 ... Q12330 33705709
    16 7b9v:q
    (2.8)    		 BS01 >7b9v:2
    aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaac
aagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggac
gggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggaguc
guucuugacuuuuacuuuggucgcuugauguuucucuucccguucg
............................................<<<<<<
<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<
<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<
<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>>
    		 ? GO:0000243 ... P54999 33705709
    17 7b9v:r
    (2.8)    		 BS01 >7b9v:2
    aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaac
aagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggac
gggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggaguc
guucuugacuuuuacuuuggucgcuugauguuucucuucccguucg
............................................<<<<<<
<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<
<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<
<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>>
    		 ? GO:0000243 ... P40204 33705709
    18 7b9v:y
    (2.8)    		 BS01 >7b9v:2
    aaucucuuugccuuuuggcuuagaucaaguguaguaucuguucuuguaac
aagaccucaaugaggcucuuguuacaauacacauuuuuuggcaccuggac
gggaagagacuuuuuauaaagugagacgucgcgacccucgcacuggaguc
guucuugacuuuuacuuuggucgcuugauguuucucuucccguucg
............................................<<<<<<
<<<<<<<<...>>>>.>>>>>>>>>>...................<<<<<
<<<<<<..<<<<<....>>>>><<<<<<<<<<<<<<........<<<<<<
<....>>>>>>.>.....>>>>>>..>>>>>>>>.>>>>>>>>>>>
    		 N/A N/A N/A 33705709
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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