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BioLiP
Download all results in tab-seperated text for 2 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    1 5dkp:l
    (2.381)    		 BS02 >5dkp:2 (identical to 5dkp:O, 5dkp:P, 5dkp:Q, 5dkp:R, 5dkp:S, 5dkp:T, 5dkp:U, 5dkp:V, 5dkp:W, 5dkp:X, 5dkp:Y, 5dkp:Z, 5dkp:o, 5dkp:p, 5dkp:q, 5dkp:r, 5dkp:s, 5dkp:t, 5dkp:u, 5dkp:v, 5dkp:w, 5dkp:x, 5dkp:y, 5dkp:z, 5dkp:0, 5dkp:1, 5dkp:3, 7fep:O, 7fep:P, 7fep:Q, 7fep:R, 7fep:S, 7fep:T, 7fep:U, 7fep:V, 7fep:W, 7fep:X, 7fep:Y, 7fep:Z, 7fep:a, 7fep:b, 7fer:O, 7fer:P, 7fer:Q, 7fer:R, 7fer:S, 7fer:T, 7fer:U, 7fer:V, 7fer:W, 7fer:X, 7fer:Y, 7fer:Z, 7fer:a, 7fer:b, 3mt6:1, 3mt6:2, 3mt6:c, 3mt6:d, 3mt6:e, 3mt6:f, 3mt6:g, 3mt6:h, 3mt6:i, 3mt6:j, 3mt6:k, 3mt6:l, 3mt6:m, 3mt6:n, 3mt6:o, 3mt6:p, 3mt6:q, 3mt6:r, 3mt6:s, 3mt6:t, 3mt6:v, 3mt6:w, 3mt6:x, 3mt6:y, 3mt6:z, 3mt6:3, 3mt6:4, 3mt6:u, 8xop:O, 8xop:P, 8xop:Q, 8xop:R, 8xop:S, 8xop:T, 8xop:U, 8xop:V, 8xop:W, 8xop:X, 8xop:Y, 8xop:Z, 8xop:a, 8xop:b)
    tFSPAAK
    		 3.4.21.92 GO:0004176 ... Q9JZ38 26818454
    2 5dkp:m
    (2.381)    		 BS01 >5dkp:2 (identical to 5dkp:O, 5dkp:P, 5dkp:Q, 5dkp:R, 5dkp:S, 5dkp:T, 5dkp:U, 5dkp:V, 5dkp:W, 5dkp:X, 5dkp:Y, 5dkp:Z, 5dkp:o, 5dkp:p, 5dkp:q, 5dkp:r, 5dkp:s, 5dkp:t, 5dkp:u, 5dkp:v, 5dkp:w, 5dkp:x, 5dkp:y, 5dkp:z, 5dkp:0, 5dkp:1, 5dkp:3, 7fep:O, 7fep:P, 7fep:Q, 7fep:R, 7fep:S, 7fep:T, 7fep:U, 7fep:V, 7fep:W, 7fep:X, 7fep:Y, 7fep:Z, 7fep:a, 7fep:b, 7fer:O, 7fer:P, 7fer:Q, 7fer:R, 7fer:S, 7fer:T, 7fer:U, 7fer:V, 7fer:W, 7fer:X, 7fer:Y, 7fer:Z, 7fer:a, 7fer:b, 3mt6:1, 3mt6:2, 3mt6:c, 3mt6:d, 3mt6:e, 3mt6:f, 3mt6:g, 3mt6:h, 3mt6:i, 3mt6:j, 3mt6:k, 3mt6:l, 3mt6:m, 3mt6:n, 3mt6:o, 3mt6:p, 3mt6:q, 3mt6:r, 3mt6:s, 3mt6:t, 3mt6:v, 3mt6:w, 3mt6:x, 3mt6:y, 3mt6:z, 3mt6:3, 3mt6:4, 3mt6:u, 8xop:O, 8xop:P, 8xop:Q, 8xop:R, 8xop:S, 8xop:T, 8xop:U, 8xop:V, 8xop:W, 8xop:X, 8xop:Y, 8xop:Z, 8xop:a, 8xop:b)
    tFSPAAK
    		 3.4.21.92 GO:0004176 ... Q9JZ38 26818454
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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