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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9401 3ms9:A (1.8) BS02 MS9 2.7.10.2 GO:0004672 ... P00520 20450175 PDBbind: -logKd/Ki=5.22, Kd=6uM
    9402 3msc:A (1.951) BS01 24S 2.4.1.1 GO:0000166 ... P00489 20947361 MOAD: ic50=484.2uM
    PDBbind: -logKd/Ki=3.31, IC50=484.2uM
    9403 3msc:A (1.951) BS02 24S 2.4.1.1 GO:0000166 ... P00489 20947361 MOAD: ic50=484.2uM
    PDBbind: -logKd/Ki=3.31, IC50=484.2uM
    9404 3msj:A (1.8) BS01 EV3 3.4.23.46 GO:0004190 ... P56817 20656487 MOAD: ic50=770uM
    PDBbind: -logKd/Ki=3.11, IC50=770uM
    BindingDB: IC50=770000nM
    9405 3msk:A (2.0) BS01 EV4 3.4.23.46 GO:0004190 ... P56817 20656487 MOAD: ic50=26uM
    PDBbind: -logKd/Ki=4.59, IC50=26uM
    BindingDB: IC50=26000nM
    9406 3msl:A (2.4) BS01 EV5 3.4.23.46 GO:0004190 ... P56817 20656487 MOAD: ic50=7uM
    PDBbind: -logKd/Ki=5.15, IC50=7uM
    BindingDB: IC50=7000nM
    9407 3mss:A (1.95) BS02 MS7 2.7.10.2 GO:0004672 ... P00520 20450175 PDBbind: -logKd/Ki=4.66, Kd=22uM
    9408 3mt7:A (2.0) BS01 16O 2.4.1.1 GO:0000166 ... P00489 20947361 MOAD: ic50=93.2uM
    PDBbind: -logKd/Ki=4.03, IC50=93.2uM
    9409 3mt7:A (2.0) BS02 16O 2.4.1.1 GO:0000166 ... P00489 20947361 MOAD: ic50=93.2uM
    PDBbind: -logKd/Ki=4.03, IC50=93.2uM
    9410 3mt8:A (2.0) BS01 17T 2.4.1.1 GO:0000166 ... P00489 20947361 MOAD: ic50=28.3uM
    PDBbind: -logKd/Ki=4.55, IC50=28.3uM
    9411 3mt8:A (2.0) BS02 17T 2.4.1.1 GO:0000166 ... P00489 20947361 MOAD: ic50=28.3uM
    PDBbind: -logKd/Ki=4.55, IC50=28.3uM
    9412 3mt9:A (2.05) BS01 18O 2.4.1.1 GO:0000166 ... P00489 20947361 MOAD: ic50=25.7uM
    PDBbind: -logKd/Ki=4.59, IC50=25.7uM
    9413 3mt9:A (2.05) BS02 18O 2.4.1.1 GO:0000166 ... P00489 20947361 MOAD: ic50=25.7uM
    PDBbind: -logKd/Ki=4.59, IC50=25.7uM
    9414 3mta:A (2.23) BS01 22O 2.4.1.1 GO:0000166 ... P00489 20947361 MOAD: ic50=50.4uM
    PDBbind: -logKd/Ki=4.30, IC50=50.4uM
    9415 3mta:A (2.23) BS02 22O 2.4.1.1 GO:0000166 ... P00489 20947361 MOAD: ic50=50.4uM
    PDBbind: -logKd/Ki=4.30, IC50=50.4uM
    9416 3mtb:A (1.95) BS01 23V 2.4.1.1 GO:0000166 ... P00489 20947361 MOAD: ic50=23.2uM
    PDBbind: -logKd/Ki=4.63, IC50=23.2uM
    9417 3mtb:A (1.95) BS02 23V 2.4.1.1 GO:0000166 ... P00489 20947361 MOAD: ic50=23.2uM
    PDBbind: -logKd/Ki=4.63, IC50=23.2uM
    9418 3mtd:A (2.096) BS01 25E 2.4.1.1 GO:0000166 ... P00489 20947361 MOAD: ic50=340.5uM
    PDBbind: -logKd/Ki=3.47, IC50=340.5uM
    9419 3mtd:A (2.096) BS02 25E 2.4.1.1 GO:0000166 ... P00489 20947361 MOAD: ic50=340.5uM
    PDBbind: -logKd/Ki=3.47, IC50=340.5uM
    9420 3mtw:A (1.7) BS03 M3R ? GO:0016787 ... Q9A4Z9 20604542 MOAD: Ki=92nM
    PDBbind: -logKd/Ki=7.04, Ki=92nM
    9421 3muf:A (2.3) BS02 S3P 2.7.1.71 GO:0000287 ... P56073 22438938 PDBbind: -logKd/Ki=6.49, Kd=0.32uM
    9422 3muz:1 (1.9) BS01 IPT 3.2.1.23 GO:0000287 ... P00722 N/A PDBbind: -logKd/Ki=3.46, Ki=0.35mM
    BindingDB: Ki=7.6e+4nM
    9423 3muz:1 (1.9) BS02 IPT 3.2.1.23 GO:0000287 ... P00722 N/A PDBbind: -logKd/Ki=3.46, Ki=0.35mM
    BindingDB: Ki=7.6e+4nM
    9424 3muz:4 (1.9) BS01 IPT 3.2.1.23 GO:0000287 ... P00722 N/A PDBbind: -logKd/Ki=3.46, Ki=0.35mM
    BindingDB: Ki=7.6e+4nM
    9425 3muz:4 (1.9) BS02 IPT 3.2.1.23 GO:0000287 ... P00722 N/A PDBbind: -logKd/Ki=3.46, Ki=0.35mM
    BindingDB: Ki=7.6e+4nM
    9426 3mv0:1 (2.2) BS01 149 3.2.1.23 GO:0000287 ... P00722 N/A PDBbind: -logKd/Ki=3.85, Ki=0.14mM
    9427 3mv0:4 (2.2) BS01 149 3.2.1.23 GO:0000287 ... P00722 N/A PDBbind: -logKd/Ki=3.85, Ki=0.14mM
    9428 3mv5:A (2.47) BS03 XFE 2.7.11.1 GO:0004672 ... P31749 20481595 MOAD: ic50=180nM
    PDBbind: -logKd/Ki=6.74, IC50=180nM
    BindingDB: IC50=180nM
    9429 3mvh:A (2.01) BS03 WFE 2.7.11.1 GO:0004672 ... P31749 20481595 MOAD: ic50=0.5nM
    PDBbind: -logKd/Ki=9.30, IC50=0.5nM
    BindingDB: IC50=0.5nM
    9430 3mvj:A (2.49) BS03 XFE 2.7.11.11 GO:0000287 ... P17612 20481595 MOAD: ic50=3200nM
    PDBbind: -logKd/Ki=5.49, IC50=3200nM
    9431 3mvl:A (2.8) BS01 38P 2.7.11.24 GO:0000077 ... Q16539 20804198 PDBbind: -logKd/Ki=7.89, IC50=13nM
    BindingDB: IC50=13nM
    9432 3mvm:A (2.0) BS01 39P 2.7.11.24 GO:0000077 ... Q16539 20804198 MOAD: ic50=3.9nM
    PDBbind: -logKd/Ki=8.41, IC50=3.9nM
    BindingDB: IC50=3.9nM
    9433 3mw1:A (2.8) BS01 MIH 2.7.11.24 GO:0000077 ... Q16539 21999461 PDBbind: -logKd/Ki=9.09, IC50=0.82nM
    BindingDB: IC50=0.820000nM
    9434 3mwu:A (1.98) BS05 BK3 2.7.11.17 GO:0004672 ... A3FQ16 21116453 PDBbind: -logKd/Ki=8.05, IC50=9nM
    9435 3mww:B (2.8) BS01 BIW 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 20942454 PDBbind: -logKd/Ki=7.24, IC50=57nM
    9436 3mx9:A (2.6) BS01 dna N/A GO:0004519 ... N/A 20846960 PDBbind: Kd=45nM
    9437 3mx9:A (2.6) BS02 dna N/A GO:0004519 ... N/A 20846960 PDBbind: Kd=45nM
    9438 3mxb:A (2.3) BS01 dna N/A GO:0004519 ... N/A 20846960 PDBbind: Kd=28nM
    9439 3mxb:A (2.3) BS02 dna N/A GO:0004519 ... N/A 20846960 PDBbind: Kd=28nM
    9440 3mxb:B (2.3) BS01 dna N/A GO:0004519 ... N/A 20846960 PDBbind: Kd=28nM
    9441 3mxb:B (2.3) BS02 dna N/A GO:0004519 ... N/A 20846960 PDBbind: Kd=28nM
    9442 3mxb:R (2.3) BS01 dna N/A GO:0004519 ... N/A 20846960 PDBbind: Kd=28nM
    9443 3mxb:R (2.3) BS02 dna N/A GO:0004519 ... N/A 20846960 PDBbind: Kd=28nM
    9444 3mxb:S (2.3) BS01 dna N/A GO:0004519 ... N/A 20846960 PDBbind: Kd=28nM
    9445 3mxb:S (2.3) BS02 dna N/A GO:0004519 ... N/A 20846960 PDBbind: Kd=28nM
    9446 3mxd:A (1.95) BS01 K53 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 20958050 MOAD: Ki=1.47nM
    PDBbind: -logKd/Ki=8.83, Ki=1.47nM
    9447 3mxd:B (1.95) BS01 K53 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 20958050 PDBbind: -logKd/Ki=8.83, Ki=1.47nM
    9448 3mxe:A (1.85) BS01 K54 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 20958050 MOAD: Ki=0.097nM
    PDBbind: -logKd/Ki=10.01, Ki=0.097nM
    9449 3mxe:B (1.85) BS01 K54 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 20958050 PDBbind: -logKd/Ki=10.01, Ki=0.097nM
    9450 3mxf:A (1.6) BS01 JQ1 ? N/A O60885 20871596 PDBbind: -logKd/Ki=7.31, Kd=49nM
    9451 3mxr:A (1.3) BS01 CZ8 3.5.2.6 GO:0008800 ... P0AD64 21041505 PDBbind: -logKd/Ki=4.95, Ki=11.3uM
    9452 3mxs:A (1.24) BS01 CZ9 3.5.2.6 GO:0008800 ... P0AD64 21041505 PDBbind: -logKd/Ki=5.01, Ki=9.8uM
    9453 3my1:A (2.8) BS01 RFZ 2.7.11.22
    2.7.11.23    		 GO:0004672 ... P50750 20851342 PDBbind: -logKd/Ki=5.45, IC50=3.58uM
    9454 3my5:A (2.1) BS01 RFZ 2.7.11.22 GO:0000082 ... P24941 20851342 MOAD: ic50=65uM
    PDBbind: -logKd/Ki=4.19, IC50=65uM
    9455 3myg:A (2.4) BS01 EML 2.7.11.1 GO:0000212 ... O14965 24900197 PDBbind: -logKd/Ki=10.70, Kd=0.02nM
    9456 3myq:A (1.35) BS02 E27 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20926301 MOAD: Kd=0.03uM
    PDBbind: -logKd/Ki=7.52, Kd=30nM
    9457 3mz3:A (3.2) BS02 B3N 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 20545365 PDBbind: -logKd/Ki=7.83, Ki=14.8nM
    9458 3mz3:A (3.2) BS03 B3N 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 20545365 PDBbind: -logKd/Ki=7.83, Ki=14.8nM
    9459 3mz6:A (2.0) BS02 B3N 3.5.1.-
    3.5.1.98    		 GO:0000118 ... Q9BY41 20545365 PDBbind: -logKd/Ki=7.20, Ki=63nM
    9460 3mzc:A (1.498) BS02 S6I 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20922253 MOAD: Ki=226nM
    PDBbind: -logKd/Ki=6.65, Ki=226nM
    BindingDB: Ki=226nM
    9461 3n0h:A (1.92) BS01 TOP 1.5.1.3 GO:0000900 ... P00374 21684339 MOAD: Ki=617nM
    PDBbind: -logKd/Ki=6.21, Ki=617nM
    BindingDB: IC50=680000nM, Ki=19070nM
    9462 3n0h:A (1.92) BS02 TOP 1.5.1.3 GO:0000900 ... P00374 21684339 MOAD: Ki=617nM
    PDBbind: -logKd/Ki=6.21, Ki=617nM
    BindingDB: IC50=680000nM, Ki=19070nM
    9463 3n0n:A (1.5) BS02 P9B 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20922253 MOAD: Ki=50nM
    PDBbind: -logKd/Ki=7.30, Ki=50nM
    BindingDB: Ki=50nM
    9464 3n1c:A (2.0) BS01 F6P 2.7.1.11 GO:0000287 ... P06999 21147773 PDBbind: -logKd/Ki=5.22, Kd=6uM
    9465 3n1c:A (2.0) BS02 F6P 2.7.1.11 GO:0000287 ... P06999 21147773 PDBbind: -logKd/Ki=5.22, Kd=6uM
    9466 3n1c:D (2.0) BS01 F6P 2.7.1.11 GO:0000287 ... P06999 21147773 PDBbind: -logKd/Ki=5.22, Kd=6uM
    9467 3n1c:D (2.0) BS02 F6P 2.7.1.11 GO:0000287 ... P06999 21147773 PDBbind: -logKd/Ki=5.22, Kd=6uM
    9468 3n1i:A (2.2) BS01 dna ? GO:0003677 ... D9J034 20551348 PDBbind: Kd=3.35nM
    9469 3n1j:A (2.65) BS01 dna ? GO:0003677 ... D9J034 20551348 PDBbind: Kd=4.45nM
    9470 3n1k:A (2.702) BS01 dna ? GO:0003677 ... D9J034 20551348 PDBbind: Kd=5.73nM
    9471 3n1l:A (2.35) BS01 dna ? GO:0003677 ... D9J034 20551348 PDBbind: Kd=4.29nM
    9472 3n1v:F (2.18) BS01 3N1 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 20711197 MOAD: ic50>500uM
    PDBbind: -logKd/Ki=3.30, IC50=500uM
    BindingDB: IC50=>500000000nM
    9473 3n1v:F (2.18) BS02 3N1 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 20711197 MOAD: ic50>500uM
    PDBbind: -logKd/Ki=3.30, IC50=500uM
    BindingDB: IC50=>500000000nM
    9474 3n1w:F (2.56) BS01 3N2 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 20711197 PDBbind: -logKd/Ki=3.30, IC50>500uM
    BindingDB: IC50=>500000000nM
    9475 3n23:A (4.6) BS01 OBN 7.2.2.13 GO:0000166 ... P05024 21182963 PDBbind: -logKd/Ki=8.52, Kd=3nM
    9476 3n2c:A (2.81) BS03 LWY ? GO:0005737 ... Q393A1 20604542 PDBbind: -logKd/Ki=5.12, Ki=7.5uM
    9477 3n2e:A (2.53) BS01 OSA 2.7.1.71 GO:0000287 ... P56073 22438938 PDBbind: -logKd/Ki=4.96, Kd=11uM
    9478 3n2p:A (1.648) BS02 AYX 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20922253 MOAD: Ki=15nM
    PDBbind: -logKd/Ki=7.82, Ki=15nM
    BindingDB: Ki=15nM
    9479 3n2u:A (1.81) BS06 D3X 3.4.24.65 GO:0004222 ... P39900 20965620 PDBbind: -logKd/Ki=7.84, Ki=14.3nM
    BindingDB: Ki=14nM
    9480 3n2v:A (1.55) BS06 JT5 3.4.24.65 GO:0004222 ... P39900 20965620 PDBbind: -logKd/Ki=7.51, Ki=31nM
    BindingDB: Ki=31nM
    9481 3n3g:A (1.6) BS02 93N 3.4.22.27 GO:0006508 ... P25774 20580231 PDBbind: -logKd/Ki=7.24, Ki=58nM
    BindingDB: EC50=138nM, IC50=58nM
    9482 3n3j:A (1.5) BS02 WWV 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20922253 MOAD: Ki=3.3nM
    PDBbind: -logKd/Ki=8.48, Ki=3.3nM
    BindingDB: Ki=3.3nM
    9483 3n3l:F (2.74) BS01 MS0 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 20711197 PDBbind: -logKd/Ki=3.30, IC50>500uM
    BindingDB: IC50=>500000000nM
    9484 3n3l:F (2.74) BS02 MS0 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 20711197 PDBbind: -logKd/Ki=3.30, IC50>500uM
    BindingDB: IC50=>500000000nM
    9485 3n45:F (1.88) BS01 3N3 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 20711197 PDBbind: -logKd/Ki=3.30, IC50>500uM
    BindingDB: IC50=>500000000nM
    9486 3n46:F (2.35) BS01 3N5 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 20711197 PDBbind: -logKd/Ki=4.30, IC50=50uM
    BindingDB: IC50=5.0e+4nM
    9487 3n49:F (2.5) BS01 3N4 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 20711197 MOAD: ic50=7uM
    PDBbind: -logKd/Ki=5.15, IC50=7uM
    BindingDB: IC50=7e+3nM
    9488 3n4b:A (1.6) BS02 WWZ 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20922253 MOAD: Ki=96nM
    PDBbind: -logKd/Ki=7.02, Ki=96nM
    BindingDB: Ki=960nM
    9489 3n4c:A (1.9) BS01 EF3 3.4.22.27 GO:0006508 ... P25774 20598883 PDBbind: -logKd/Ki=8.02, IC50=9.5nM
    9490 3n4l:A (2.7) BS01 842 3.4.23.46 GO:0004190 ... P56817 20634069 PDBbind: -logKd/Ki=7.23, IC50=59nM
    BindingDB: IC50=59nM
    9491 3n51:A (2.1) BS01 BK3 2.7.11.17 GO:0004672 ... Q9BJF5 21116453 PDBbind: -logKd/Ki=7.82, IC50=15nM
    BindingDB: IC50=15.0nM
    9492 3n5h:F (2.2) BS01 GO0 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 20711197 MOAD: ic50=2uM
    PDBbind: -logKd/Ki=5.70, IC50=2uM
    BindingDB: IC50=2e+3nM
    9493 3n5h:F (2.2) BS02 GO0 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 20711197 MOAD: ic50=2uM
    PDBbind: -logKd/Ki=5.70, IC50=2uM
    BindingDB: IC50=2e+3nM
    9494 3n5j:F (2.35) BS01 GO1 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 20711197 MOAD: ic50=6uM
    PDBbind: -logKd/Ki=5.22, IC50=6uM
    BindingDB: IC50=6e+3nM
    9495 3n5j:F (2.35) BS02 GO1 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 20711197 MOAD: ic50=6uM
    PDBbind: -logKd/Ki=5.22, IC50=6uM
    BindingDB: IC50=6e+3nM
    9496 3n6k:F (2.25) BS01 BFH 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 20711197 MOAD: Kd=180nM
    PDBbind: -logKd/Ki=6.74, Kd=180nM
    BindingDB: IC50=920nM
    9497 3n75:A (2.0) BS01 G4P 4.1.1.18 GO:0003824 ... P0A9H3 21278708 MOAD: Kd=12.8nM
    PDBbind: -logKd/Ki=7.89, Kd=12.8nM
    9498 3n75:A (2.0) BS02 G4P 4.1.1.18 GO:0003824 ... P0A9H3 21278708 MOAD: Kd=12.8nM
    PDBbind: -logKd/Ki=7.89, Kd=12.8nM
    9499 3n75:D (2.0) BS01 G4P 4.1.1.18 GO:0003824 ... P0A9H3 21278708 MOAD: Kd=12.8nM
    PDBbind: -logKd/Ki=7.89, Kd=12.8nM
    9500 3n75:D (2.0) BS02 G4P 4.1.1.18 GO:0003824 ... P0A9H3 21278708 MOAD: Kd=12.8nM
    PDBbind: -logKd/Ki=7.89, Kd=12.8nM
    9501 3n76:A (1.9) BS01 CA2 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=0.14uM
    PDBbind: -logKd/Ki=6.85, Ki=0.14uM
    9502 3n7a:A (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    PDBbind: -logKd/Ki=3.70, Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    9503 3n7a:L (2.0) BS01 FA1 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=200uM
    PDBbind: -logKd/Ki=3.70, Ki=200uM
    BindingDB: Kd=200000nM, Ki=200000nM
    9504 3n7h:A (1.6) BS01 DE3 ? GO:0005549 ... Q8T6S0 21671117 MOAD: Kd=31.3uM
    PDBbind: -logKd/Ki=4.50, Kd=31.3uM
    9505 3n7h:B (1.6) BS01 DE3 ? GO:0005549 ... Q8T6S0 21671117 MOAD: Kd=31.3uM
    PDBbind: -logKd/Ki=4.50, Kd=31.3uM
    9506 3n7o:A (1.8) BS01 N7O 3.4.21.39 GO:0002003 ... P23946 20599788 MOAD: Ki=72nM
    PDBbind: -logKd/Ki=7.14, Ki=72nM
    BindingDB: IC50=58nM
    9507 3n7s:A (2.1) BS01 3N6 ? GO:0004930 ... Q16602 20826335 MOAD: Kd<20nM
    PDBbind: -logKd/Ki=7.70, Kd=20nM
    BindingDB: IC50=0.030000nM, Ki=0.010000nM, EC50=0.026000nM
    9508 3n7s:D (2.1) BS01 3N6 ? GO:0006886 ... O60894 20826335 PDBbind: -logKd/Ki=7.70, Kd=20nM
    9509 3n86:A (1.9) BS01 RJP 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=2.3uM
    PDBbind: -logKd/Ki=5.64, Ki=2.3uM
    9510 3n86:A (1.9) BS02 RJP 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=2.3uM
    PDBbind: -logKd/Ki=5.64, Ki=2.3uM
    9511 3n86:L (1.9) BS01 RJP 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=2.3uM
    PDBbind: -logKd/Ki=5.64, Ki=2.3uM
    9512 3n86:L (1.9) BS02 RJP 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=2.3uM
    PDBbind: -logKd/Ki=5.64, Ki=2.3uM
    9513 3n87:A (2.4) BS01 N87 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=11uM
    PDBbind: -logKd/Ki=4.96, Ki=11uM
    9514 3n87:L (2.4) BS01 N87 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=11uM
    PDBbind: -logKd/Ki=4.96, Ki=11uM
    9515 3n87:L (2.4) BS02 N87 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=11uM
    PDBbind: -logKd/Ki=4.96, Ki=11uM
    9516 3n8k:A (2.25) BS01 D1X 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Kd=90uM
    PDBbind: -logKd/Ki=4.05, Kd=90uM
    9517 3n8k:L (2.25) BS01 D1X 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Kd=90uM
    PDBbind: -logKd/Ki=4.05, Kd=90uM
    9518 3n8n:A (2.5) BS01 N88 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=27uM
    PDBbind: -logKd/Ki=4.57, Ki=27uM
    9519 3n8n:L (2.5) BS01 N88 4.2.1.10 GO:0003855 ... P9WPX7 21410435 MOAD: Ki=27uM
    PDBbind: -logKd/Ki=4.57, Ki=27uM
    9520 3n9r:A (1.8) BS02 TD3 N/A GO:0004332 ... N/A 20929256 MOAD: Ki=5.5uM
    PDBbind: -logKd/Ki=7.15, Ki=70nM
    9521 3n9r:e (1.8) BS02 TD3 N/A GO:0004332 ... N/A 20929256 PDBbind: -logKd/Ki=7.15, Ki=70nM
    9522 3n9s:A (1.85) BS01 TD4 N/A GO:0004332 ... N/A 20929256 MOAD: Ki=0.07uM
    PDBbind: -logKd/Ki=5.26, Kd=5.5uM
    9523 3n9s:B (1.85) BS03 TD4 N/A GO:0004332 ... N/A 20929256 MOAD: Ki=0.07uM
    PDBbind: -logKd/Ki=5.26, Kd=5.5uM
    9524 3nae:A (2.003) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 20795733 PDBbind: Kd=760uM
    9525 3nae:A (2.003) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 20795733 PDBbind: Kd=760uM
    9526 3nal:A (2.65) BS01 DBK 7.2.2.10 GO:0000166 ... B6CAM1 20551329 PDBbind: -logKd/Ki=8.10, Kd=8nM
    9527 3nam:A (3.1) BS02 OTK 7.2.2.10 GO:0000166 ... B6CAM1 20551329 PDBbind: -logKd/Ki=8.46, Kd=3.5nM
    9528 3nan:A (3.1) BS01 HZ1 7.2.2.10 GO:0000166 ... B6CAM1 20551329 PDBbind: -logKd/Ki=8.22, Kd=6nM
    9529 3nb5:A (1.8) BS02 R21 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 21332115 MOAD: Ki=18nM
    PDBbind: -logKd/Ki=7.74, Ki=18nM
    BindingDB: Ki=18nM
    9530 3nba:A (2.68) BS01 APC 2.7.7.3 GO:0003824 ... P9WPA5 20851704 PDBbind: -logKd/Ki=3.41, Ki=388uM
    9531 3nba:C (2.68) BS01 APC 2.7.7.3 GO:0003824 ... P9WPA5 20851704 PDBbind: -logKd/Ki=3.41, Ki=388uM
    9532 3nc4:A (2.07) BS01 26O 2.4.1.1 GO:0000166 ... P00489 20947361 MOAD: ic50=26.6uM
    PDBbind: -logKd/Ki=4.58, IC50=26.6uM
    9533 3nc4:A (2.07) BS02 26O 2.4.1.1 GO:0000166 ... P00489 20947361 MOAD: ic50=26.6uM
    PDBbind: -logKd/Ki=4.58, IC50=26.6uM
    9534 3nc9:A (2.4) BS01 TR3 2.7.1.3 GO:0004454 ... P50053 21033679 PDBbind: -logKd/Ki=6.48, IC50=330nM
    BindingDB: IC50=590nM
    9535 3nc9:B (2.4) BS01 TR3 2.7.1.3 GO:0004454 ... P50053 21033679 MOAD: ic50=330nM
    PDBbind: -logKd/Ki=6.48, IC50=330nM
    BindingDB: IC50=590nM
    9536 3ncg:A (2.49) BS04 BK1 2.7.11.17 GO:0004672 ... A3FQ16 21116453 PDBbind: -logKd/Ki=6.82, IC50=150nM
    9537 3nci:A (1.79) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 21158418 PDBbind: Kd=70uM
    9538 3nci:A (1.79) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 21158418 PDBbind: Kd=70uM
    9539 3ncq:A (1.24) BS01 ATP ? GO:0005524 ... O28527 20643148 PDBbind: -logKd/Ki=5.36, Kd=4.4uM
    9540 3ncq:A (1.24) BS02 ATP ? GO:0005524 ... O28527 20643148 PDBbind: -logKd/Ki=5.36, Kd=4.4uM
    9541 3ncq:B (1.24) BS01 ATP ? GO:0005524 ... O28527 20643148 PDBbind: -logKd/Ki=5.36, Kd=4.4uM
    9542 3ncq:B (1.24) BS02 ATP ? GO:0005524 ... O28527 20643148 PDBbind: -logKd/Ki=5.36, Kd=4.4uM
    9543 3ncr:A (1.44) BS01 ADP ? GO:0005524 ... O28527 20643148 PDBbind: -logKd/Ki=4.11, Kd=77.5uM
    9544 3ncr:A (1.44) BS04 ADP ? GO:0005524 ... O28527 20643148 PDBbind: -logKd/Ki=4.11, Kd=77.5uM
    9545 3ncr:B (1.44) BS01 ADP ? GO:0005524 ... O28527 20643148 PDBbind: -logKd/Ki=4.11, Kd=77.5uM
    9546 3ncr:B (1.44) BS03 ADP ? GO:0005524 ... O28527 20643148 PDBbind: -logKd/Ki=4.11, Kd=77.5uM
    9547 3ncu:A (2.55) BS01 rna 3.6.4.13 N/A O95786 20581823 PDBbind: Kd=29.2nM
    9548 3ncu:A (2.55) BS02 rna 3.6.4.13 N/A O95786 20581823 PDBbind: Kd=29.2nM
    9549 3ncu:B (2.55) BS01 rna 3.6.4.13 N/A O95786 20581823 PDBbind: Kd=29.2nM
    9550 3ncz:A (3.0) BS01 3NC 2.7.11.1 GO:0004672 ... Q13464 20678931 PDBbind: -logKd/Ki=7.82, IC50=15nM
    9551 3ndk:A (2.0) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 21216248 PDBbind: Kd=68uM
    9552 3ndk:A (2.0) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 21216248 PDBbind: Kd=68uM
    9553 3ndm:B (3.3) BS01 3ND 2.7.11.1 GO:0004672 ... Q13464 20471253 PDBbind: -logKd/Ki=7.96, IC50=11nM
    9554 3ne6:A (2.001) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 21216248 PDBbind: Kd=12uM
    9555 3ne6:A (2.001) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 21216248 PDBbind: Kd=12uM
    9556 3nef:A (2.4) BS01 PYV 3.1.3.16 GO:0004864 ... Q8VZS8 20554531 PDBbind: -logKd/Ki=5.94, IC50=1.14uM
    9557 3neg:A (2.801) BS01 PYV 3.1.3.16 GO:0004864 ... Q8VZS8 20554531 PDBbind: -logKd/Ki=5.94, IC50=1.14uM
    9558 3neo:A (2.0) BS01 G24 ? GO:0005179 ... P02766 20937391 PDBbind: -logKd/Ki=5.92, Kd=1.2uM
    9559 3neo:B (2.0) BS01 G24 ? GO:0005179 ... P02766 20937391 PDBbind: -logKd/Ki=5.92, Kd=1.2uM
    9560 3nes:A (1.75) BS01 B72 ? GO:0005179 ... P02766 20937391 PDBbind: -logKd/Ki=5.62, Kd=2.4uM
    9561 3nes:B (1.75) BS01 B72 ? GO:0005179 ... P02766 20937391 PDBbind: -logKd/Ki=5.62, Kd=2.4uM
    9562 3new:A (2.51) BS01 3NE 2.7.11.24 GO:0000077 ... Q16539 21090814 PDBbind: -logKd/Ki=5.00, Kd=10uM
    9563 3nex:A (1.7) BS01 G24 ? GO:0005179 ... P02766 20937391 PDBbind: -logKd/Ki=6.00, Kd=1.0uM
    9564 3nex:B (1.7) BS01 G24 ? GO:0005179 ... P02766 20937391 PDBbind: -logKd/Ki=6.00, Kd=1.0uM
    9565 3nf6:A (1.9) BS01 IMV 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 21602613 MOAD: ic50=295uM
    PDBbind: -logKd/Ki=3.53, IC50=295uM
    9566 3nf6:A (1.9) BS02 IMV 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 21602613 MOAD: ic50=295uM
    PDBbind: -logKd/Ki=3.53, IC50=295uM
    9567 3nf6:A (1.9) BS03 IMV 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 21602613 MOAD: ic50=295uM
    PDBbind: -logKd/Ki=3.53, IC50=295uM
    9568 3nf6:B (1.9) BS01 IMV 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 21602613 MOAD: ic50=295uM
    PDBbind: -logKd/Ki=3.53, IC50=295uM
    9569 3nf6:B (1.9) BS02 IMV 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 21602613 MOAD: ic50=295uM
    PDBbind: -logKd/Ki=3.53, IC50=295uM
    9570 3nf6:B (1.9) BS03 IMV 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 21602613 MOAD: ic50=295uM
    PDBbind: -logKd/Ki=3.53, IC50=295uM
    9571 3nf7:A (1.8) BS01 CIW 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 21602613 MOAD: ic50=340uM
    PDBbind: -logKd/Ki=3.47, IC50=340uM
    9572 3nf8:A (1.9) BS01 CDQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 21602613 PDBbind: -logKd/Ki=3.00, IC50>1000uM
    9573 3nf8:A (1.9) BS02 CDQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 21602613 PDBbind: -logKd/Ki=3.00, IC50>1000uM
    9574 3nf8:A (1.9) BS03 CDQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 21602613 PDBbind: -logKd/Ki=3.00, IC50>1000uM
    9575 3nf8:A (1.9) BS04 CDQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 21602613 PDBbind: -logKd/Ki=3.00, IC50>1000uM
    9576 3nf8:A (1.9) BS05 CDQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 21602613 PDBbind: -logKd/Ki=3.00, IC50>1000uM
    9577 3nf8:B (1.9) BS01 CDQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 21602613 PDBbind: -logKd/Ki=3.00, IC50>1000uM
    9578 3nf8:B (1.9) BS02 CDQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 21602613 PDBbind: -logKd/Ki=3.00, IC50>1000uM
    9579 3nf8:B (1.9) BS03 CDQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 21602613 PDBbind: -logKd/Ki=3.00, IC50>1000uM
    9580 3nf8:B (1.9) BS04 CDQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 21602613 PDBbind: -logKd/Ki=3.00, IC50>1000uM
    9581 3nf8:B (1.9) BS05 CDQ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 21602613 PDBbind: -logKd/Ki=3.00, IC50>1000uM
    9582 3nf9:A (1.95) BS01 CD9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 21602613 MOAD: ic50=290uM
    PDBbind: -logKd/Ki=3.54, IC50=290uM
    9583 3nga:A (2.71) BS01 3NG 2.7.11.1 GO:0004672 ... P68400 21093442 PDBbind: -logKd/Ki=8.00, Kd=10nM
    BindingDB: IC50=2000nM, Kd=0.562341nM, Ki=0.380000nM
    9584 3ngi:A (1.886) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 21216248 PDBbind: Kd=1011uM
    9585 3ngi:A (1.886) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 21216248 PDBbind: Kd=1011uM
    9586 3nhg:A (2.5) BS01 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 21216248 PDBbind: Kd=1141uM
    9587 3nhg:A (2.5) BS02 dna 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 21216248 PDBbind: Kd=1141uM
    9588 3nhi:A (1.43) BS01 EAH ? GO:0005549 ... Q95NY5 21152418 PDBbind: -logKd/Ki=8.43, Kd=3.7nM
    9589 3nht:A (1.45) BS01 U46 ? GO:0005549 ... Q95NY5 21152418 MOAD: Kd=98nM
    PDBbind: -logKd/Ki=7.01, Kd=98nM
    9590 3ni5:A (2.1) BS02 C1H 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 21549597 MOAD: Ki=28nM
    PDBbind: -logKd/Ki=7.55, Ki=28nM
    BindingDB: Ki=28nM
    9591 3nif:A (2.4) BS05 NIF ? GO:0007155 ... P08514 20679525 PDBbind: -logKd/Ki=5.10, IC50=8uM
    BindingDB: IC50=9700nM
    9592 3njq:B (2.0) BS01 NJQ 3.4.21.97 GO:0004252 ... P88911 21723875 MOAD: Kd=1.7uM
    PDBbind: -logKd/Ki=4.89, Kd=13uM
    9593 3njq:B (2.0) BS02 NJQ 3.4.21.97 GO:0004252 ... P88911 21723875 MOAD: Kd=1.7uM
    PDBbind: -logKd/Ki=4.89, Kd=13uM
    9594 3njy:A (2.6) BS02 8XQ 1.14.11.66
    1.14.11.69    		 N/A O75164 21124847 PDBbind: -logKd/Ki=5.77, IC50=1.7uM
    BindingDB: IC50=1700nM, EC50=87000nM
    9595 3nk8:A (1.15) BS02 JKZ 3.4.21.4 GO:0004175 ... P00760 20886466 PDBbind: -logKd/Ki=3.00, Kd>1mM
    9596 3nkk:A (1.12) BS02 JLZ 3.4.21.4 GO:0004175 ... P00760 20886466 MOAD: Kd=20uM
    PDBbind: -logKd/Ki=4.70, Kd=20uM
    9597 3nlb:A (1.9) BS01 5BE 2.7.11.1 GO:0000077 ... O14757 20976184 MOAD: ic50=35nM
    PDBbind: -logKd/Ki=7.46, IC50=35nM
    9598 3nmq:A (2.2) BS01 7PP ? GO:0005524 ... P08238 21131419 PDBbind: -logKd/Ki=9.70, Ki=0.2nM
    9599 3nmr:A (1.85) BS01 rna ? GO:0003676 ... Q92879 20947024 PDBbind: Kd=0.65uM
    9600 3nnu:A (2.4) BS01 EDB 2.7.11.24 GO:0000077 ... Q16539 20800479 MOAD: ic50=48nM
    PDBbind: -logKd/Ki=7.32, IC50=48nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218