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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9001 3kl6:A (1.45) BS01 443 3.4.21.6 GO:0004252 ... P00742 20355714 MOAD: ic50=3.5nM
    PDBbind: -logKd/Ki=8.46, IC50=3.5nM
    BindingDB: IC50=3.5nM, Ki=1.8nM
    9002 3km4:A (1.9) BS01 22X 3.4.23.15 GO:0004190 ... P00797 19959358 MOAD: ic50=1.3nM
    PDBbind: -logKd/Ki=8.89, IC50=1.3nM
    BindingDB: IC50=1.3nM
    9003 3km4:A (1.9) BS02 22X 3.4.23.15 GO:0004190 ... P00797 19959358 MOAD: ic50=1.3nM
    PDBbind: -logKd/Ki=8.89, IC50=1.3nM
    BindingDB: IC50=1.3nM
    9004 3km4:A (1.9) BS03 22X 3.4.23.15 GO:0004190 ... P00797 19959358 MOAD: ic50=1.3nM
    PDBbind: -logKd/Ki=8.89, IC50=1.3nM
    BindingDB: IC50=1.3nM
    9005 3km4:B (1.9) BS01 22X 3.4.23.15 GO:0004190 ... P00797 19959358 MOAD: ic50=1.3nM
    PDBbind: -logKd/Ki=8.89, IC50=1.3nM
    BindingDB: IC50=1.3nM
    9006 3km4:B (1.9) BS02 22X 3.4.23.15 GO:0004190 ... P00797 19959358 MOAD: ic50=1.3nM
    PDBbind: -logKd/Ki=8.89, IC50=1.3nM
    BindingDB: IC50=1.3nM
    9007 3km4:B (1.9) BS03 22X 3.4.23.15 GO:0004190 ... P00797 19959358 MOAD: ic50=1.3nM
    PDBbind: -logKd/Ki=8.89, IC50=1.3nM
    BindingDB: IC50=1.3nM
    9008 3kmm:A (2.8) BS01 LHL 2.7.10.2 GO:0004672 ... P06239 N/A PDBbind: -logKd/Ki=9.70, Kd=0.2nM
    BindingDB: Kd=0.2nM
    9009 3kmp:A (2.7) BS01 dna ? GO:0005667 ... P70340 20147459 PDBbind: Kd=111.9nM
    9010 3kmp:A (2.7) BS02 dna ? GO:0005667 ... P70340 20147459 PDBbind: Kd=111.9nM
    9011 3kmp:B (2.7) BS01 dna ? GO:0005667 ... P70340 20147459 PDBbind: Kd=111.9nM
    9012 3kmp:B (2.7) BS02 dna ? GO:0005667 ... P70340 20147459 PDBbind: Kd=111.9nM
    9013 3kmx:A (1.7) BS01 G00 3.4.23.46 GO:0004190 ... P56817 20043700 MOAD: Kd=15uM
    PDBbind: -logKd/Ki=4.82, Kd=15uM
    BindingDB: Kd=15nM, IC50=200nM
    9014 3kmy:A (1.9) BS01 D8Y 3.4.23.46 GO:0004190 ... P56817 20043700 MOAD: Kd=32uM
    PDBbind: -logKd/Ki=4.49, Kd=32uM
    BindingDB: Kd=32nM
    9015 3kn0:A (1.9) BS01 3TO 3.4.23.46 GO:0004190 ... P56817 20043700 MOAD: Kd~100uM
    PDBbind: -logKd/Ki=3.60, IC50=250uM
    BindingDB: IC50=250nM
    9016 3koo:A (2.791) BS01 24D 3.1.3.76
    3.3.2.10    		 GO:0000287 ... P34913 19969453 PDBbind: -logKd/Ki=7.82, IC50=15nM
    BindingDB: IC50=15nM
    9017 3kpu:A (2.4) BS02 ES1 2.1.1.28 GO:0004603 ... P11086 20642456 MOAD: Kd=690uM
    PDBbind: -logKd/Ki=3.16, Kd=690uM
    9018 3kpv:A (2.4) BS02 ADE 2.1.1.28 GO:0004603 ... P11086 20642456 MOAD: Kd=180uM
    PDBbind: -logKd/Ki=3.74, Kd=180uM
    9019 3kpw:A (2.4) BS02 1SQ 2.1.1.28 GO:0004603 ... P11086 20642456 MOAD: Kd=14uM
    PDBbind: -logKd/Ki=4.85, Kd=14uM
    9020 3kqa:A (2.25) BS01 TR9 2.5.1.7 GO:0003824 ... P33038 20392080 PDBbind: -logKd/Ki=4.85, IC50=14uM
    9021 3kqb:A (2.25) BS01 LGJ 3.4.21.6 GO:0004252 ... P00742 20100660 MOAD: Ki=0.5nM
    PDBbind: -logKd/Ki=9.30, Ki=0.5nM
    BindingDB: Ki=0.5nM
    9022 3kqc:A (2.2) BS01 LGK 3.4.21.6 GO:0004252 ... P00742 20100660 MOAD: Ki=2.2nM
    PDBbind: -logKd/Ki=8.66, Ki=2.2nM
    BindingDB: Ki=2.2nM
    9023 3kqd:A (2.75) BS01 LGL 3.4.21.6 GO:0004252 ... P00742 20100660 PDBbind: -logKd/Ki=9.40, Ki=0.40nM
    BindingDB: Ki=0.4nM
    9024 3kqe:A (2.35) BS01 LGM 3.4.21.6 GO:0004252 ... P00742 20100660 MOAD: Ki=8.1nM
    PDBbind: -logKd/Ki=8.09, Ki=8.1nM
    BindingDB: Ki=8.1nM
    9025 3kqm:A (2.4) BS02 ES3 2.1.1.28 GO:0004603 ... P11086 20642456 MOAD: Kd=170uM
    PDBbind: -logKd/Ki=3.77, Kd=170uM
    9026 3kqo:A (2.4) BS02 ES4 2.1.1.28 GO:0004603 ... P11086 20642456 MOAD: Kd=140uM
    PDBbind: -logKd/Ki=3.85, Kd=140uM
    9027 3kqp:A (2.4) BS02 ES5 2.1.1.28 GO:0004603 ... P11086 20642456 MOAD: Kd=380uM
    PDBbind: -logKd/Ki=3.42, Kd=380uM
    9028 3kqr:A (1.5) BS01 OPE ? GO:0001849 ... P02743 21360619 PDBbind: -logKd/Ki=4.43, Kd=36.8uM
    9029 3kqs:A (2.005) BS02 AX7 2.1.1.28 GO:0004603 ... P11086 20642456 MOAD: Kd=6.3uM
    PDBbind: -logKd/Ki=5.20, Kd=6.3uM
    9030 3kqt:A (2.399) BS02 ES7 2.1.1.28 GO:0004603 ... P11086 20642456 MOAD: Kd=4.6uM
    PDBbind: -logKd/Ki=5.34, Kd=4.6uM
    9031 3kqw:A (2.486) BS02 ES9 2.1.1.28 GO:0004603 ... P11086 20642456 MOAD: Kd=97uM
    PDBbind: -logKd/Ki=4.01, Kd=97uM
    9032 3kqy:A (2.2) BS02 ES0 2.1.1.28 GO:0004603 ... P11086 20642456 MOAD: Kd=15uM
    PDBbind: -logKd/Ki=4.82, Kd=15uM
    9033 3kr0:A (2.6) BS02 172 2.1.1.28 GO:0004603 ... P11086 20642456 PDBbind: -logKd/Ki=4.70, Kd=20uM
    9034 3kr1:A (2.3) BS02 VGD 2.1.1.28 GO:0004603 ... P11086 20642456 MOAD: Kd=1.8uM
    PDBbind: -logKd/Ki=5.74, Kd=1.8uM
    9035 3kr2:A (2.3) BS02 ET2 2.1.1.28 GO:0004603 ... P11086 20642456 MOAD: Kd=7.2uM
    PDBbind: -logKd/Ki=5.14, Kd=7.2uM
    9036 3kr4:A (2.0) BS03 BES 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789 MOAD: Ki=25nM
    PDBbind: -logKd/Ki=7.60, Ki=25nM
    9037 3kr4:F (2.0) BS03 BES 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789 MOAD: Ki=25nM
    PDBbind: -logKd/Ki=7.60, Ki=25nM
    9038 3kr5:A (2.56) BS04 BEY 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789 PDBbind: -logKd/Ki=7.89, Ki=13nM
    9039 3kr5:F (2.56) BS04 BEY 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 20133789 PDBbind: -logKd/Ki=7.89, Ki=13nM
    9040 3kr8:A (2.1) BS02 XAV 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 20565110 MOAD: Kd=8nM
    PDBbind: -logKd/Ki=8.10, Kd=8nM
    BindingDB: IC50=4nM, Kd=10nM
    9041 3krd:C (2.5) BS01 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127 PDBbind: -logKd/Ki=8.17, Ki=6.8nM
    9042 3krd:C (2.5) BS02 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127 PDBbind: -logKd/Ki=8.17, Ki=6.8nM
    9043 3krd:E (2.5) BS01 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127 PDBbind: -logKd/Ki=8.17, Ki=6.8nM
    9044 3krd:H (2.5) BS01 FEB 3.4.25.1 GO:0004298 ... P9WHT9 20558127 PDBbind: -logKd/Ki=8.17, Ki=6.8nM
    9045 3krj:A (2.1) BS01 KRJ 2.7.10.1 GO:0004672 ... P07333
    P11362    		 22039836 MOAD: ic50=1.1nM
    PDBbind: -logKd/Ki=8.96, IC50=1.1nM
    9046 3krl:A (2.4) BS01 KRL 2.7.10.1 GO:0004672 ... P07333
    P11362    		 22039836 MOAD: ic50=0.8nM
    PDBbind: -logKd/Ki=9.10, IC50=0.8nM
    9047 3krr:A (1.8) BS01 DQX 2.7.10.2 GO:0004672 ... O60674 20587663 MOAD: ic50=0.48nM
    PDBbind: -logKd/Ki=9.32, IC50=0.48nM
    BindingDB: Kd=42000nM, IC50=7.3nM
    9048 3krw:A (2.9) BS01 BA1 2.7.11.15 GO:0001664 ... P25098 20128603 PDBbind: -logKd/Ki=7.38, IC50=42nM
    BindingDB: IC50=42nM
    9049 3krx:A (3.1) BS01 BA1 2.7.11.15 GO:0001664 ... P25098 20128603 PDBbind: -logKd/Ki=7.38, IC50=42nM
    BindingDB: IC50=42nM
    9050 3kry:A (1.9) BS05 3KR 3.4.24.- GO:0004222 ... P45452 20726512 MOAD: ic50=0.1nM
    PDBbind: -logKd/Ki=10.00, IC50=0.1nM
    9051 3ksl:A (2.05) BS01 SZH 2.5.1.58
    2.5.1.59    		 GO:0004659 ... Q04631 19954434 PDBbind: -logKd/Ki=4.52, IC50=30uM
    9052 3ksl:B (2.05) BS02 SZH 2.5.1.58 GO:0003824 ... Q02293 19954434 PDBbind: -logKd/Ki=4.52, IC50=30uM
    9053 3ksq:B (2.1) BS04 Z96 2.5.1.58 GO:0003824 ... Q02293 20056542 MOAD: ic50=0.38nM
    PDBbind: -logKd/Ki=9.42, IC50=0.38nM
    9054 3kv2:A (1.55) BS03 NNH 3.5.3.1 GO:0000050 ... P05089 20153713 MOAD: Kd=47.51nM
    PDBbind: -logKd/Ki=7.32, Kd=47.51nM
    BindingDB: Kd=47nM, IC50=1360nM
    9055 3kvw:A (2.28) BS01 IRB 2.7.12.1 GO:0004672 ... Q92630 N/A PDBbind: -logKd/Ki=6.89, IC50=0.13uM
    9056 3kvx:A (2.4) BS01 FMY 2.7.11.24 GO:0004672 ... P53779 19947601 MOAD: ic50=0.148uM
    PDBbind: -logKd/Ki=6.83, IC50=0.148uM
    9057 3kw9:A (1.8) BS01 ORG 3.4.22.38 GO:0006508 ... P43235 20149657 PDBbind: -logKd/Ki=9.00, IC50=1nM
    BindingDB: IC50=1nM
    9058 3kwa:A (2.0) BS02 SPM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 20590092 PDBbind: -logKd/Ki=4.08, Ki=84uM
    BindingDB: Ki=84000nM
    9059 3kwb:X (2.02) BS01 ORH 3.4.22.38 GO:0006508 ... P43235 20153187 PDBbind: -logKd/Ki=7.77, IC50=17nM
    BindingDB: IC50=17nM
    9060 3kwf:A (2.4) BS01 B1Q 3.4.14.5 GO:0001618 ... P27487 20031405 MOAD: ic50=6.8nM
    PDBbind: -logKd/Ki=8.17, IC50=6.8nM
    BindingDB: IC50=6.8nM
    9061 3kwj:A (2.8) BS01 23Q 3.4.14.5 GO:0001618 ... P27487 20031408 PDBbind: -logKd/Ki=9.30, IC50=0.5nM
    BindingDB: IC50=0.500000nM
    9062 3kwz:A (1.49) BS01 KWZ 3.4.22.38 GO:0006508 ... P43235 20149657 PDBbind: -logKd/Ki=8.40, IC50=4nM
    BindingDB: IC50=4nM
    9063 3kx1:A (1.51) BS01 KX1 3.4.22.38 GO:0006508 ... P43235 20149657 MOAD: ic50=100nM
    PDBbind: -logKd/Ki=7.00, IC50=100nM
    BindingDB: IC50=100nM
    9064 3kxz:A (2.37) BS02 925 2.7.10.2 GO:0004672 ... P06239 20038108 MOAD: ic50=0.035uM
    PDBbind: -logKd/Ki=7.46, IC50=35nM
    9065 3kyf:A (2.1) BS01 5GP ? GO:0000166 ... Q88EQ6 20226196 PDBbind: -logKd/Ki=6.78, Kd=165.0nM
    9066 3kyf:A (2.1) BS02 5GP ? GO:0000166 ... Q88EQ6 20226196 PDBbind: -logKd/Ki=6.78, Kd=165.0nM
    9067 3kyf:A (2.1) BS03 5GP ? GO:0000166 ... Q88EQ6 20226196 PDBbind: -logKd/Ki=6.78, Kd=165.0nM
    9068 3kyf:A (2.1) BS04 5GP ? GO:0000166 ... Q88EQ6 20226196 PDBbind: -logKd/Ki=6.78, Kd=165.0nM
    9069 3kyg:A (2.1) BS01 5GP ? GO:0000166 ... Q9KNC3 20226196 PDBbind: -logKd/Ki=7.46, Kd=34.3nM
    9070 3kyg:A (2.1) BS02 5GP ? GO:0000166 ... Q9KNC3 20226196 PDBbind: -logKd/Ki=7.46, Kd=34.3nM
    9071 3kyg:A (2.1) BS03 5GP ? GO:0000166 ... Q9KNC3 20226196 PDBbind: -logKd/Ki=7.46, Kd=34.3nM
    9072 3kyg:A (2.1) BS04 5GP ? GO:0000166 ... Q9KNC3 20226196 PDBbind: -logKd/Ki=7.46, Kd=34.3nM
    9073 3kyg:B (2.1) BS01 5GP ? GO:0000166 ... Q9KNC3 20226196 PDBbind: -logKd/Ki=7.46, Kd=34.3nM
    9074 3kyg:B (2.1) BS02 5GP ? GO:0000166 ... Q9KNC3 20226196 PDBbind: -logKd/Ki=7.46, Kd=34.3nM
    9075 3kyg:B (2.1) BS03 5GP ? GO:0000166 ... Q9KNC3 20226196 PDBbind: -logKd/Ki=7.46, Kd=34.3nM
    9076 3kyg:B (2.1) BS04 5GP ? GO:0000166 ... Q9KNC3 20226196 PDBbind: -logKd/Ki=7.46, Kd=34.3nM
    9077 3kyq:A (2.443) BS01 DPV 2.3.1.- GO:0000139 ... Q5EGY4 20159557 MOAD: Kd=61uM
    PDBbind: -logKd/Ki=4.22, Kd=60uM
    9078 3kyr:A (2.6) BS01 038 3.4.23.46 GO:0004190 ... P56817 N/A PDBbind: -logKd/Ki=6.72, IC50=0.19uM
    BindingDB: IC50=190nM
    9079 3l08:A (2.7) BS01 ZIG 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 24900173 PDBbind: -logKd/Ki=10.22, Ki=60pM
    BindingDB: IC50=0.600000nM
    9080 3l0e:A (2.3) BS02 G58 ? GO:0003677 ... P55055 20345102 MOAD: ic50=10nM
    PDBbind: -logKd/Ki=8.00, IC50=10nM
    9081 3l0k:A (1.34) BS01 6AU 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 19472232 MOAD: ic50=24uM
    PDBbind: -logKd/Ki=4.62, IC50=24uM
    9082 3l0k:A (1.34) BS02 6AU 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 19472232 MOAD: ic50=24uM
    PDBbind: -logKd/Ki=4.62, IC50=24uM
    9083 3l0k:B (1.34) BS01 6AU 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 19472232 MOAD: ic50=24uM
    PDBbind: -logKd/Ki=4.62, IC50=24uM
    9084 3l0k:B (1.34) BS02 6AU 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 19472232 MOAD: ic50=24uM
    PDBbind: -logKd/Ki=4.62, IC50=24uM
    9085 3l0n:A (1.74) BS01 S5P 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 19472232 MOAD: ic50=1680uM
    PDBbind: -logKd/Ki=2.77, IC50=1680uM
    9086 3l0n:A (1.74) BS02 S5P 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 19472232 MOAD: ic50=1680uM
    PDBbind: -logKd/Ki=2.77, IC50=1680uM
    9087 3l0n:B (1.74) BS01 S5P 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 19472232 MOAD: ic50=1680uM
    PDBbind: -logKd/Ki=2.77, IC50=1680uM
    9088 3l0n:B (1.74) BS02 S5P 2.4.2.10
    4.1.1.23    		 GO:0004590 ... P11172 19472232 MOAD: ic50=1680uM
    PDBbind: -logKd/Ki=2.77, IC50=1680uM
    9089 3l0v:A (1.75) BS02 724 3.4.24.86 GO:0004222 ... P78536 20172725 MOAD: Ki=23nM
    PDBbind: -logKd/Ki=7.64, Ki=23nM
    BindingDB: Ki=23nM
    9090 3l13:A (3.0) BS01 JZW 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 20050669 PDBbind: -logKd/Ki=7.82, IC50=15nM
    BindingDB: IC50=15nM
    9091 3l16:A (2.9) BS01 JZX 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 20050669 PDBbind: -logKd/Ki=7.48, IC50=33nM
    BindingDB: IC50=33nM
    9092 3l17:A (3.0) BS01 JZY 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 20050669 PDBbind: -logKd/Ki=8.28, IC50=5.2nM
    BindingDB: IC50=5.2nM
    9093 3l1n:A (1.3) BS01 PLM ? N/A O42721 20053994 MOAD: Kd=6.34uM
    PDBbind: -logKd/Ki=5.63, Kd=2.34uM
    9094 3l1s:A (2.9) BS01 Z92 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 20138514 PDBbind: -logKd/Ki=8.70, Ki=2nM
    9095 3l25:A (2.0) BS01 rna ? N/A Q05127 20081868 PDBbind: Kd=500nM
    9096 3l25:A (2.0) BS02 rna ? N/A Q05127 20081868 PDBbind: Kd=500nM
    9097 3l25:B (2.0) BS01 rna ? N/A Q05127 20081868 PDBbind: Kd=500nM
    9098 3l25:B (2.0) BS02 rna ? N/A Q05127 20081868 PDBbind: Kd=500nM
    9099 3l25:D (2.0) BS01 rna ? N/A Q05127 20081868 PDBbind: Kd=500nM
    9100 3l25:D (2.0) BS02 rna ? N/A Q05127 20081868 PDBbind: Kd=500nM
    9101 3l25:E (2.0) BS01 rna ? N/A Q05127 20081868 PDBbind: Kd=500nM
    9102 3l25:E (2.0) BS02 rna ? N/A Q05127 20081868 PDBbind: Kd=500nM
    9103 3l2c:A (1.868) BS01 dna ? GO:0003700 ... P98177 21123876 PDBbind: Kd=360nM
    9104 3l2c:A (1.868) BS02 dna ? GO:0003700 ... P98177 21123876 PDBbind: Kd=360nM
    9105 3l2y:A (2.7) BS03 OPE ? GO:0001849 ... P02741 21360619 PDBbind: -logKd/Ki=4.49, Kd=32.07uM
    9106 3l38:A (2.1) BS01 879 3.4.23.46 GO:0004190 ... P56817 20223661 MOAD: ic50=0.1uM
    PDBbind: -logKd/Ki=7.00, IC50=0.1uM
    BindingDB: IC50=100nM
    9107 3l3a:A (2.362) BS01 625 3.4.23.46 GO:0004190 ... P56817 20223661 MOAD: ic50=0.42uM
    PDBbind: -logKd/Ki=6.38, IC50=0.42uM
    BindingDB: IC50=420nM
    9108 3l3l:A (2.5) BS01 L3L 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 20045315 MOAD: Ki=33nM
    PDBbind: -logKd/Ki=7.48, Ki=33nM
    BindingDB: EC50=51nM, Ki=33nM
    9109 3l3m:A (2.5) BS01 A92 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 20337371 MOAD: Ki=0.006uM
    PDBbind: -logKd/Ki=8.22, Ki=6nM
    9110 3l3n:A (2.3) BS03 LSW 3.4.15.1 GO:0006508 ... P12821 20233165 PDBbind: -logKd/Ki=8.18, Ki=6.6nM
    BindingDB: Ki=7000nM
    9111 3l4t:A (1.9) BS01 BJ1 3.2.1.20 GO:0003824 ... O43451 20039683 MOAD: Ki=3.8uM
    PDBbind: -logKd/Ki=5.42, Ki=3.8uM
    9112 3l4u:A (1.9) BS01 DSK 3.2.1.20 GO:0003824 ... O43451 20039683 MOAD: Ki=0.03uM
    PDBbind: -logKd/Ki=7.52, Ki=0.03uM
    9113 3l4v:A (2.1) BS01 KTL 3.2.1.20 GO:0003824 ... O43451 20039683 MOAD: Ki=0.19uM
    PDBbind: -logKd/Ki=6.72, Ki=0.19uM
    9114 3l4w:A (2.0) BS01 MIG 3.2.1.20 GO:0003824 ... O43451 20039683 MOAD: Ki=1uM
    PDBbind: -logKd/Ki=6.00, Ki=1.0uM
    BindingDB: IC50=6000nM, Ki=1000nM
    9115 3l4x:A (1.9) BS01 NR3 3.2.1.20 GO:0003824 ... O43451 20039683 MOAD: Ki=0.13uM
    PDBbind: -logKd/Ki=6.89, Ki=0.13uM
    9116 3l4y:A (1.8) BS01 NR4 3.2.1.20 GO:0003824 ... O43451 20039683 MOAD: Ki=0.1uM
    PDBbind: -logKd/Ki=7.00, Ki=0.10uM
    9117 3l4z:A (2.0) BS01 SSD 3.2.1.20 GO:0003824 ... O43451 20039683 MOAD: Ki=0.19uM
    PDBbind: -logKd/Ki=6.72, Ki=0.19uM
    9118 3l54:A (2.3) BS01 LXX 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 24900173 PDBbind: -logKd/Ki=8.15, IC50=7nM
    9119 3l58:A (1.8) BS01 CS5 3.4.23.46 GO:0004190 ... P56817 20043696 MOAD: ic50=8nM
    PDBbind: -logKd/Ki=8.10, IC50=8nM
    BindingDB: IC50=20nM
    9120 3l59:A (2.0) BS01 BDJ 3.4.23.46 GO:0004190 ... P56817 20043696 MOAD: Kd=200uM
    PDBbind: -logKd/Ki=3.70, Kd=200uM
    9121 3l5b:A (1.8) BS01 BDO 3.4.23.46 GO:0004190 ... P56817 20043696 MOAD: Kd=123uM
    PDBbind: -logKd/Ki=3.91, Kd=123uM
    9122 3l5c:A (1.8) BS01 BDQ 3.4.23.46 GO:0004190 ... P56817 20043696 MOAD: ic50=7000nM
    PDBbind: -logKd/Ki=5.15, IC50=7000nM
    9123 3l5d:A (1.75) BS01 BDV 3.4.23.46 GO:0004190 ... P56817 20043696 MOAD: ic50~78000nM
    PDBbind: -logKd/Ki=4.11, IC50=78000nM
    9124 3l5e:A (1.53) BS01 BDW 3.4.23.46 GO:0004190 ... P56817 20043696 MOAD: ic50=27nM
    PDBbind: -logKd/Ki=7.57, IC50=27nM
    BindingDB: Ki=27nM
    9125 3l5f:A (1.7) BS01 BDX 3.4.23.46 GO:0004190 ... P56817 20043696 MOAD: ic50=605nM
    PDBbind: -logKd/Ki=6.22, IC50=605nM
    9126 3l5r:A (1.94) BS01 47X 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 20185308 MOAD: ic50=38nM
    PDBbind: -logKd/Ki=7.42, IC50=38nM
    BindingDB: IC50=38nM, Ki=38nM
    9127 3l5r:C (1.94) BS01 47X 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 20185308 PDBbind: -logKd/Ki=7.42, IC50=38nM
    BindingDB: IC50=38nM, Ki=38nM
    9128 3l79:A (1.86) BS01 DKX 2.4.1.1 GO:0000166 ... P00489 20430629 MOAD: Ki=3.46mM
    PDBbind: -logKd/Ki=2.46, Ki=3.46mM
    9129 3l7a:A (1.9) BS01 DKY 2.4.1.1 GO:0000166 ... P00489 20430629 MOAD: Ki=46.42uM
    PDBbind: -logKd/Ki=4.33, Ki=46.42uM
    9130 3l7b:A (2.0) BS01 DKZ 2.4.1.1 GO:0000166 ... P00489 20430629 MOAD: Ki=4.01mM
    PDBbind: -logKd/Ki=2.40, Ki=4.01mM
    9131 3l7c:A (1.93) BS01 DK4 2.4.1.1 GO:0000166 ... P00489 20430629 MOAD: Ki=3.67mM
    PDBbind: -logKd/Ki=2.44, Ki=3.67mM
    9132 3l7d:A (2.0) BS01 DK5 2.4.1.1 GO:0000166 ... P00489 20430629 MOAD: Ki=6.55mM
    PDBbind: -logKd/Ki=2.18, Ki=6.55mM
    9133 3l7g:A (2.7) BS01 M44 3.1.8.1
    3.4.13.9
    3.8.2.2    		 GO:0004063 ... Q44238 20000741 PDBbind: -logKd/Ki=3.30, Ki=0.5mM
    9134 3l8s:A (2.35) BS01 BFF 2.7.11.24 GO:0000077 ... Q16539 20201574 MOAD: Kd=99nM
    PDBbind: -logKd/Ki=7.00, Kd=99.0nM
    9135 3l8v:A (2.4) BS01 L8V 2.7.10.1 GO:0004672 ... P08581 20382527 MOAD: ic50=0.008uM
    PDBbind: -logKd/Ki=8.10, IC50=8nM
    BindingDB: IC50=8nM
    9136 3l9h:A (2.0) BS02 EMQ ? GO:0003777 ... P52732 20149654 MOAD: ic50=8nM
    PDBbind: -logKd/Ki=8.10, IC50=8nM
    BindingDB: IC50=8nM
    9137 3l9l:A (2.0) BS02 L9L 2.7.11.11 GO:0000287 ... P17612 20137943 MOAD: ic50=167nM
    PDBbind: -logKd/Ki=6.78, IC50=167nM
    9138 3l9m:A (1.9) BS02 L9M 2.7.11.11 GO:0000287 ... P17612 20137943 PDBbind: -logKd/Ki=7.30, IC50=50nM
    9139 3l9n:A (2.0) BS02 L9N 2.7.11.11 GO:0000287 ... P17612 20137943 PDBbind: -logKd/Ki=8.07, IC50=8.6nM
    9140 3lau:A (2.1) BS01 OFI 2.7.11.1 GO:0004672 ... O14965 20167481 MOAD: ic50=0.044uM
    PDBbind: -logKd/Ki=4.52, IC50=30uM
    9141 3lbj:E (1.5) BS01 WW8 ? GO:0005634 ... O15151 20237429 PDBbind: -logKd/Ki=4.96, Ki=11uM
    BindingDB: EC50=20000nM
    9142 3lbj:E (1.5) BS02 WW8 ? GO:0005634 ... O15151 20237429 PDBbind: -logKd/Ki=4.96, Ki=11uM
    BindingDB: EC50=20000nM
    9143 3lbk:A (2.3) BS01 K23 2.3.2.27 GO:0005634 ... Q00987 20237429 PDBbind: -logKd/Ki=6.04, Ki=916nM
    BindingDB: Ki=920nM
    9144 3lbl:A (1.6) BS01 MI6 2.3.2.27 GO:0005634 ... Q00987 20237429 MOAD: Ki=36nM
    PDBbind: -logKd/Ki=7.44, Ki=36nM
    BindingDB: Ki=3.0nM
    9145 3lbz:A (2.3) BS02 Z89 ? N/A P41182 20385364 MOAD: Kd=138uM
    PDBbind: -logKd/Ki=3.86, Kd=138uM
    9146 3lbz:A (2.3) BS03 Z89 ? N/A P41182 20385364 MOAD: Kd=138uM
    PDBbind: -logKd/Ki=3.86, Kd=138uM
    9147 3lbz:B (2.3) BS01 Z89 ? N/A P41182 20385364 MOAD: Kd=138uM
    PDBbind: -logKd/Ki=3.86, Kd=138uM
    9148 3lbz:B (2.3) BS02 Z89 ? N/A P41182 20385364 MOAD: Kd=138uM
    PDBbind: -logKd/Ki=3.86, Kd=138uM
    9149 3lbz:B (2.3) BS04 Z89 ? N/A P41182 20385364 MOAD: Kd=138uM
    PDBbind: -logKd/Ki=3.86, Kd=138uM
    9150 3lc3:A (1.9) BS01 IYX 3.4.21.22 GO:0004252 ... P00740 20121198 MOAD: Ki=5.9uM
    PDBbind: -logKd/Ki=5.23, Ki=5.9uM
    9151 3lc3:A (1.9) BS02 IYX 3.4.21.22 GO:0004252 ... P00740 20121198 MOAD: Ki=5.9uM
    PDBbind: -logKd/Ki=5.23, Ki=5.9uM
    9152 3lc5:A (2.62) BS02 IZX 3.4.21.22 GO:0004252 ... P00740 20121197 PDBbind: -logKd/Ki=6.57, Ki=0.27uM
    9153 3lcd:A (2.5) BS01 BDY 2.7.10.1 GO:0004672 ... P07333 20137931 MOAD: ic50=40nM
    PDBbind: -logKd/Ki=7.40, IC50=40nM
    9154 3lce:A (2.0) BS01 LCE 3.5.2.6 GO:0008658 ... P14489 20141132 PDBbind: -logKd/Ki=3.81, IC50=156uM
    9155 3lco:A (3.4) BS01 LC0 2.7.10.1 GO:0004672 ... P07333 20137931 PDBbind: -logKd/Ki=6.84, IC50=143nM
    BindingDB: IC50=143nM
    9156 3lcu:A (2.1) BS01 SAH 2.1.1.179 GO:0006364 ... Q7M0R2 20194115 MOAD: Kd=300uM
    PDBbind: -logKd/Ki=3.52, Kd=300uM
    9157 3lcv:B (2.0) BS01 SAM 2.1.1.179 GO:0006364 ... Q7M0R2 20194115 MOAD: Kd=18uM
    PDBbind: -logKd/Ki=4.74, Kd=18uM
    9158 3ldp:A (2.2) BS01 3P1 3.6.4.10 GO:0005524 ... P11021 21526763 MOAD: Kd=2.41uM
    PDBbind: -logKd/Ki=5.62, Kd=2.41uM
    BindingDB: koff=0.4s-1, Kd=2.41e+3nM
    9159 3ldq:A (1.9) BS01 3P1 3.6.4.10 GO:0005524 ... P11142 21526763 MOAD: Kd=2.41uM
    PDBbind: -logKd/Ki=5.36, Ki=4.32uM
    9160 3ldw:A (2.47) BS01 ZOL ? GO:0004161 ... A5K4U6 21084289 MOAD: Ki=10.7nM
    PDBbind: -logKd/Ki=7.97, Ki=10.7nM
    9161 3le6:A (2.0) BS01 2BZ 2.7.11.22 GO:0000082 ... P24941 20832307 MOAD: ic50=0.035uM
    PDBbind: -logKd/Ki=7.46, IC50=0.035uM
    9162 3le8:A (1.7) BS01 2B5 6.3.2.1 GO:0000287 ... P9WIL5 20232910 MOAD: Kd=860nM
    PDBbind: -logKd/Ki=6.07, Kd=860nM
    BindingDB: Kd=860nM
    9163 3le9:A (1.85) BS02 727 3.4.24.86 GO:0004222 ... P78536 20663669 MOAD: Ki=6nM
    PDBbind: -logKd/Ki=8.22, Ki=6nM
    BindingDB: Ki=6nM
    9164 3lea:A (2.0) BS01 Z93 3.4.24.86 GO:0004222 ... P78536 20663669 MOAD: Ki=0.8nM
    PDBbind: -logKd/Ki=9.10, Ki=0.8nM
    9165 3lf0:A (2.4) BS01 ATP ? GO:0000166 ... P9WN31 20521335 MOAD: Kd=1.93uM
    PDBbind: -logKd/Ki=5.71, Kd=1.93uM
    9166 3lf0:A (2.4) BS02 ATP ? GO:0000166 ... P9WN31 20521335 MOAD: Kd=1.93uM
    PDBbind: -logKd/Ki=5.71, Kd=1.93uM
    9167 3lf0:B (2.4) BS01 ATP ? GO:0000166 ... P9WN31 20521335 MOAD: Kd=1.93uM
    PDBbind: -logKd/Ki=5.71, Kd=1.93uM
    9168 3lf0:B (2.4) BS02 ATP ? GO:0000166 ... P9WN31 20521335 MOAD: Kd=1.93uM
    PDBbind: -logKd/Ki=5.71, Kd=1.93uM
    9169 3lfn:A (2.28) BS01 A27 2.7.11.22 GO:0000082 ... P24941 20167481 MOAD: ic50=3160nM
    PDBbind: -logKd/Ki=5.50, IC50=3160nM
    9170 3lfs:A (2.4) BS01 A07 2.7.11.22 GO:0000082 ... P24941 20167481 MOAD: Ki=2.5uM
    PDBbind: -logKd/Ki=5.60, IC50=2500nM
    BindingDB: IC50=2500nM
    9171 3lgp:A (1.9) BS02 50X 3.4.24.86 GO:0004222 ... P78536 20638281 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    BindingDB: Ki=2nM
    9172 3lgs:A (2.2) BS01 SAH 3.2.2.16 GO:0000003 ... Q9T0I8 20554051 MOAD: Kd=24.8uM
    PDBbind: -logKd/Ki=4.61, Kd=24.8uM
    9173 3lgs:B (2.2) BS01 SAH 3.2.2.16 GO:0000003 ... Q9T0I8 20554051 MOAD: Kd=24.8uM
    PDBbind: -logKd/Ki=4.61, Kd=24.8uM
    9174 3lhg:A (2.1) BS01 Z81 3.4.23.46 GO:0004190 ... P56817 20202842 MOAD: ic50=0.02uM
    PDBbind: -logKd/Ki=7.70, IC50=0.02uM
    BindingDB: IC50=20nM
    9175 3lhj:A (3.31) BS01 LHJ 2.7.11.24 GO:0000077 ... Q16539 20218619 PDBbind: -logKd/Ki=9.51, Kd=0.31nM
    BindingDB: Ki=2.3nM, Kd=0.31nM
    9176 3lhs:A (1.3) BS01 SF8 ? N/A A0A0H3K9U6 20147287 PDBbind: -logKd/Ki=9.00, Kd~1nM
    9177 3li2:A (2.2) BS01 SF8 ? N/A A0A0H3K9U6 20147287 PDBbind: -logKd/Ki=9.00, Kd~1nM
    9178 3lik:A (1.8) BS06 EEG 3.4.24.65 GO:0004222 ... P39900 20817735 MOAD: Ki=1.92nM
    PDBbind: -logKd/Ki=8.72, Ki=1.92nM
    BindingDB: Ki=1.92nM
    9179 3lil:A (1.8) BS06 EEA 3.4.24.65 GO:0004222 ... P39900 20817735 MOAD: Ki=8.3nM
    PDBbind: -logKd/Ki=8.08, Ki=8.3nM
    BindingDB: Ki=8.3nM
    9180 3lir:A (1.9) BS06 EEC 3.4.24.65 GO:0004222 ... P39900 20817735 MOAD: Ki=119nM
    PDBbind: -logKd/Ki=6.92, Ki=119nM
    BindingDB: Ki=119nM
    9181 3liw:A (2.22) BS03 RUP 3.4.21.6 GO:0004252 ... P00742 12437104 MOAD: Ki=0.025uM
    PDBbind: -logKd/Ki=7.60, Ki=0.025uM
    9182 3lj3:A (2.43) BS01 WYE 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 20188552 MOAD: ic50=43nM
    PDBbind: -logKd/Ki=9.03, IC50=0.94nM
    9183 3lj7:A (2.3) BS01 OHO 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 20493882 PDBbind: -logKd/Ki=8.34, IC50=4.6nM
    9184 3ljg:A (1.313) BS06 EEF 3.4.24.65 GO:0004222 ... P39900 20817735 MOAD: Ki=18.6nM
    PDBbind: -logKd/Ki=7.73, Ki=18.6nM
    9185 3ljj:A (1.55) BS01 10U 3.4.21.4 GO:0004175 ... P00760 21111747 MOAD: Kd=300nM
    PDBbind: -logKd/Ki=6.52, Kd=300nM
    9186 3ljo:A (1.5) BS01 11U 3.4.21.4 GO:0004175 ... P00760 21111747 MOAD: Kd=239nM
    PDBbind: -logKd/Ki=6.62, Kd=239nM
    9187 3ljt:A (1.6) BS01 LA3 3.4.24.- GO:0004222 ... Q9UNA0 21370305 MOAD: ic50=129nM
    PDBbind: -logKd/Ki=6.89, IC50=129nM
    9188 3ljz:A (2.0) BS05 LA3 3.4.24.- GO:0004222 ... P45452 21370305 MOAD: Ki=7.3nM
    PDBbind: -logKd/Ki=8.14, Ki=7.3nM
    9189 3lk0:B (2.04) BS03 Z80 ? GO:0005509 ... P02638 21132089 MOAD: Kd=696.9uM
    PDBbind: -logKd/Ki=3.16, Kd=696.9uM
    9190 3lk8:A (1.8) BS06 Z79 3.4.24.65 GO:0004222 ... P39900 17269766 MOAD: Kd=19.7nM
    PDBbind: -logKd/Ki=7.71, Kd=19.7nM
    BindingDB: Ki=20nM
    9191 3lka:A (1.8) BS06 M4S 3.4.24.65 GO:0004222 ... P39900 20415416 MOAD: Kd=1.5mM
    PDBbind: -logKd/Ki=2.82, Kd=1.5mM
    9192 3lkh:A (2.05) BS01 LT6 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 20219368 MOAD: ic50=0.8uM
    PDBbind: -logKd/Ki=6.10, IC50=0.8uM
    9193 3lkj:A (2.5) BS01 LKJ ? GO:0005164 ... P29965 21417339 PDBbind: -logKd/Ki=4.60, IC50=25uM
    9194 3lkj:B (2.5) BS01 LKJ ? GO:0005164 ... P29965 21417339 PDBbind: -logKd/Ki=4.60, IC50=25uM
    9195 3lkj:C (2.5) BS01 LKJ ? GO:0005164 ... P29965 21417339 MOAD: ic50=25uM
    PDBbind: -logKd/Ki=4.60, IC50=25uM
    9196 3lkz:A (2.0) BS01 SFG 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q9Q6P4 20685660 PDBbind: -logKd/Ki=6.15, IC50=0.7uM
    9197 3lle:A (1.85) BS03 SGE ? GO:0005509 ... P02638 21132089 PDBbind: -logKd/Ki=4.97, Kd=10.7uM
    9198 3lle:B (1.85) BS03 SGE ? GO:0005509 ... P02638 21132089 PDBbind: -logKd/Ki=4.97, Kd=10.7uM
    9199 3llm:A (2.8) BS02 ADP 3.6.4.13 GO:0003676 ... Q08211 20510246 PDBbind: -logKd/Ki=4.74, Kd=18uM
    9200 3lm1:A (2.1) BS04 LEC ? GO:0030246 ... P18674 20826825 MOAD: Kd=20uM
    PDBbind: -logKd/Ki=4.70, Kd=20uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218