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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8401 3gxq:A (2.35) BS02 dna ? GO:0006355 ... A0A0H2XIU6 19759211 PDBbind: Kd=127nM
    8402 3gxq:B (2.35) BS01 dna ? GO:0006355 ... A0A0H2XIU6 19759211 PDBbind: Kd=127nM
    8403 3gxq:B (2.35) BS02 dna ? GO:0006355 ... A0A0H2XIU6 19759211 PDBbind: Kd=127nM
    8404 3gxt:A (2.7) BS01 NOJ 3.2.1.22 GO:0003824 ... P06280 19374450 PDBbind: -logKd/Ki=4.74, Ki=18uM
    8405 3gxt:B (2.7) BS01 NOJ 3.2.1.22 GO:0003824 ... P06280 19374450 PDBbind: -logKd/Ki=4.74, Ki=18uM
    8406 3gxy:A (2.4) BS01 MAN ? GO:0030246 ... P81180 12110688 PDBbind: -logKd/Ki=5.59, Kd=2.6uM
    8407 3gxy:A (2.4) BS02 MAN ? GO:0030246 ... P81180 12110688 PDBbind: -logKd/Ki=5.59, Kd=2.6uM
    8408 3gxy:A (2.4) BS03 MAN ? GO:0030246 ... P81180 12110688 PDBbind: -logKd/Ki=5.59, Kd=2.6uM
    8409 3gxy:A (2.4) BS04 MAN ? GO:0030246 ... P81180 12110688 PDBbind: -logKd/Ki=5.59, Kd=2.6uM
    8410 3gxy:B (2.4) BS01 MAN ? GO:0030246 ... P81180 12110688 PDBbind: -logKd/Ki=5.59, Kd=2.6uM
    8411 3gxy:B (2.4) BS02 MAN ? GO:0030246 ... P81180 12110688 PDBbind: -logKd/Ki=5.59, Kd=2.6uM
    8412 3gxy:B (2.4) BS03 OPM ? GO:0030246 ... P81180 12110688 PDBbind: -logKd/Ki=5.59, Kd=2.6uM
    8413 3gxy:B (2.4) BS04 MAN ? GO:0030246 ... P81180 12110688 PDBbind: -logKd/Ki=5.59, Kd=2.6uM
    8414 3gxy:B (2.4) BS05 MAN ? GO:0030246 ... P81180 12110688 PDBbind: -logKd/Ki=5.59, Kd=2.6uM
    8415 3gy2:A (1.57) BS02 BRN 3.4.21.4 GO:0004175 ... P00760 20356563 MOAD: Kd=1.8uM
    PDBbind: -logKd/Ki=5.74, Kd=1.80uM
    8416 3gy3:A (1.7) BS02 PNT 3.4.21.4 GO:0004175 ... P00760 20356563 MOAD: Kd=2.36uM
    PDBbind: -logKd/Ki=5.63, Kd=2.36uM
    8417 3gy4:A (1.55) BS02 PBZ 3.4.21.4 GO:0004175 ... P00760 20356563 MOAD: Kd=8uM
    PDBbind: -logKd/Ki=5.10, Kd=8uM
    8418 3gy7:A (1.55) BS02 BEN 3.4.21.4 GO:0004175 ... P00760 20356563 MOAD: Kd=30uM
    PDBbind: -logKd/Ki=4.52, Kd=30uM
    8419 3gyh:X (2.8) BS01 dna ? GO:0003677 ... Q9UTN9 19516334 PDBbind: Kd=0.016nM
    8420 3gyh:X (2.8) BS02 dna ? GO:0003677 ... Q9UTN9 19516334 PDBbind: Kd=0.016nM
    8421 3gyn:A (2.15) BS01 B42 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 19796938 MOAD: ic50=0.047uM
    PDBbind: -logKd/Ki=7.21, IC50=0.061uM
    8422 3gz9:A (2.0) BS02 D32 ? GO:0003677 ... Q03181 19464171 MOAD: Ki=0.004uM
    PDBbind: -logKd/Ki=8.40, IC50=4nM
    BindingDB: EC50=54nM, Ki=4nM
    8423 3gzn:B (3.0) BS02 B39 6.2.1.64 GO:0000278 ... Q8TBC4 20129059 PDBbind: -logKd/Ki=8.00, IC50=10nM
    BindingDB: IC50=5.0nM
    8424 3h03:A (1.9) BS01 UBP ? GO:0015276 ... P19491 19284741 MOAD: ic50=135uM
    PDBbind: -logKd/Ki=3.87, IC50=135uM
    8425 3h06:G (2.8) BS01 VBP ? GO:0015276 ... P19491 19284741 PDBbind: -logKd/Ki=3.53, IC50=292uM
    BindingDB: IC50=290000nM
    8426 3h0a:D (2.1) BS02 D30 ? GO:0003677 ... P37231 19464171 MOAD: Ki=0.033uM
    PDBbind: -logKd/Ki=7.48, Ki=33nM
    BindingDB: EC50=160nM, Ki=33nM
    8427 3h0b:A (2.7) BS01 B35 3.4.23.46 GO:0004190 ... P56817 19409780 PDBbind: -logKd/Ki=5.49, IC50=3.2uM
    8428 3h0d:A (2.4) BS01 dna ? GO:0003677 ... C3W947 19498169 PDBbind: Kd=22.2nM
    8429 3h0d:A (2.4) BS02 dna ? GO:0003677 ... C3W947 19498169 PDBbind: Kd=22.2nM
    8430 3h0d:B (2.4) BS01 dna ? GO:0003677 ... C3W947 19498169 PDBbind: Kd=22.2nM
    8431 3h0d:B (2.4) BS02 dna ? GO:0003677 ... C3W947 19498169 PDBbind: Kd=22.2nM
    8432 3h0e:A (1.997) BS01 H0E 3.4.22.56 GO:0001554 ... P42574 19836248 PDBbind: -logKd/Ki=8.15, IC50=7nM
    8433 3h0j:A (2.8) BS01 B36 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 20219367 PDBbind: -logKd/Ki=6.49, IC50=325nM
    8434 3h0j:B (2.8) BS01 B36 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 20219367 PDBbind: -logKd/Ki=6.49, IC50=325nM
    8435 3h0j:B (2.8) BS02 B36 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 20219367 PDBbind: -logKd/Ki=6.49, IC50=325nM
    8436 3h0q:A (2.5) BS01 B37 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 20219367 PDBbind: -logKd/Ki=6.07, IC50=842nM
    8437 3h0q:B (2.5) BS01 B37 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 20219367 PDBbind: -logKd/Ki=6.07, IC50=842nM
    8438 3h0q:B (2.5) BS02 B37 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 20219367 PDBbind: -logKd/Ki=6.07, IC50=842nM
    8439 3h0s:A (2.43) BS01 B38 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 20219367 PDBbind: -logKd/Ki=6.20, IC50=634nM
    8440 3h0s:B (2.43) BS01 B38 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 20219367 PDBbind: -logKd/Ki=6.20, IC50=634nM
    8441 3h0v:A (2.24) BS01 M2T 4.1.1.50 GO:0004014 ... P17707 19527050 MOAD: ic50=15uM
    PDBbind: -logKd/Ki=4.82, IC50=15uM
    8442 3h0v:B (2.24) BS01 M2T 4.1.1.50 GO:0004014 ... P17707 19527050 PDBbind: -logKd/Ki=4.82, IC50=15uM
    8443 3h0w:A (1.81) BS01 N8M 4.1.1.50 GO:0004014 ... P17707 19527050 MOAD: ic50=600nM
    PDBbind: -logKd/Ki=6.22, IC50=600nM
    BindingDB: IC50=600nM
    8444 3h0w:B (1.81) BS01 N8M 4.1.1.50 GO:0004014 ... P17707 19527050 PDBbind: -logKd/Ki=6.22, IC50=600nM
    BindingDB: IC50=600nM
    8445 3h0y:A (2.5) BS01 48B 2.7.11.1 GO:0000212 ... O14965 19402633 MOAD: ic50=0.006uM
    PDBbind: -logKd/Ki=8.22, IC50=6nM
    BindingDB: IC50=6nM
    8446 3h0z:A (2.92) BS01 45B 2.7.11.1 GO:0000212 ... O14965 19402633 PDBbind: -logKd/Ki=8.37, IC50=4.3nM
    BindingDB: IC50=4.3nM
    8447 3h1x:A (1.4) BS01 IMN 3.1.1.4 GO:0004623 ... P59071 19462410 MOAD: Kd=0.000000064M
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    8448 3h21:A (2.32) BS01 B52 2.5.1.15 GO:0004156 ... Q81VW8 19899766 MOAD: ic50=19.8uM
    PDBbind: -logKd/Ki=4.70, IC50=19.8uM
    BindingDB: IC50=19800nM
    8449 3h22:A (2.4) BS01 B53 2.5.1.15 GO:0004156 ... Q81VW8 19899766 MOAD: ic50=8uM
    PDBbind: -logKd/Ki=5.10, IC50=8uM
    BindingDB: IC50=8000nM
    8450 3h23:A (2.2) BS01 B54 2.5.1.15 GO:0004156 ... Q81VW8 19899766 MOAD: ic50=19.3uM
    PDBbind: -logKd/Ki=4.71, IC50=19.3uM
    BindingDB: IC50=19300nM
    8451 3h26:A (2.5) BS01 B56 2.5.1.15 GO:0004156 ... Q81VW8 19899766 MOAD: ic50=32.4uM
    PDBbind: -logKd/Ki=4.49, IC50=32.4uM
    BindingDB: Kd=5260nM, IC50=32400nM
    8452 3h2a:A (2.4) BS01 B57 2.5.1.15 GO:0004156 ... Q81VW8 19899766 MOAD: ic50=108.9uM
    PDBbind: -logKd/Ki=3.96, IC50=108.9uM
    BindingDB: IC50=108900nM
    8453 3h2c:A (2.6) BS01 B58 2.5.1.15 GO:0004156 ... Q81VW8 19899766 PDBbind: -logKd/Ki=3.30, IC50=500uM
    BindingDB: IC50=>500000nM
    8454 3h2f:A (2.2) BS01 B60 2.5.1.15 GO:0004156 ... Q81VW8 19899766 MOAD: ic50=86.7uM
    PDBbind: -logKd/Ki=4.06, IC50=86.7uM
    BindingDB: IC50=86700nM
    8455 3h2m:A (2.31) BS01 B61 2.5.1.15 GO:0004156 ... Q81VW8 19899766 MOAD: ic50=215uM
    PDBbind: -logKd/Ki=3.67, IC50=215uM
    BindingDB: IC50=215000nM
    8456 3h2n:A (2.4) BS01 B62 2.5.1.15 GO:0004156 ... Q81VW8 19899766 MOAD: ic50=212.6uM
    PDBbind: -logKd/Ki=3.67, IC50=212.6uM
    8457 3h2o:A (2.7) BS01 B63 2.5.1.15 GO:0004156 ... Q81VW8 19899766 PDBbind: -logKd/Ki=4.59, IC50=25.9uM
    BindingDB: IC50=25900nM
    8458 3h30:A (1.56) BS01 RFZ 2.7.11.1 GO:0004672 ... P68400 18291315 MOAD: Ki=29.2uM
    PDBbind: -logKd/Ki=4.53, Ki=29.2uM
    BindingDB: Ki=4500nM, IC50=13000nM
    8459 3h30:A (1.56) BS02 RFZ 2.7.11.1 GO:0004672 ... P68400 18291315 MOAD: Ki=29.2uM
    PDBbind: -logKd/Ki=4.53, Ki=29.2uM
    BindingDB: Ki=4500nM, IC50=13000nM
    8460 3h3c:A (2.0) BS01 P1E 2.7.10.2 GO:0004672 ... Q14289 19428251 MOAD: ic50=140nM
    PDBbind: -logKd/Ki=6.85, IC50=140nM
    BindingDB: IC50=88nM
    8461 3h59:A (2.1) BS01 H59 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 19700319 PDBbind: -logKd/Ki=7.89, IC50=0.013uM
    8462 3h5b:A (1.29) BS01 031 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 19473017 PDBbind: -logKd/Ki=10.00, Ki=0.099nM
    8463 3h5b:B (1.29) BS01 031 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 19473017 MOAD: Ki=0.099nM
    PDBbind: -logKd/Ki=10.00, Ki=0.099nM
    8464 3h5s:A (2.0) BS01 H5S 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 19709881 MOAD: ic50=0.005uM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    8465 3h5u:A (1.95) BS01 H5U 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 19709881 MOAD: ic50=0.003uM
    PDBbind: -logKd/Ki=8.52, IC50=3nM
    8466 3h78:A (1.7) BS01 BE2 2.3.1.262 GO:0004315 ... P20582 19694421 PDBbind: -logKd/Ki=4.24, Kd=57uM
    8467 3h78:B (1.7) BS01 BE2 2.3.1.262 GO:0004315 ... P20582 19694421 PDBbind: -logKd/Ki=4.24, Kd=57uM
    8468 3h78:B (1.7) BS02 BE2 2.3.1.262 GO:0004315 ... P20582 19694421 PDBbind: -logKd/Ki=4.24, Kd=57uM
    8469 3h89:A (2.5) BS01 NSX 3.4.22.15 GO:0006508 ... P07711 19761244 MOAD: Ki=0.023uM
    PDBbind: -logKd/Ki=7.64, Ki=0.023uM
    8470 3h8b:A (1.8) BS01 NSY 3.4.22.15 GO:0006508 ... P07711 19761244 MOAD: Ki=0.511uM
    PDBbind: -logKd/Ki=6.29, Ki=0.511uM
    8471 3h8b:A (1.8) BS02 NSY 3.4.22.15 GO:0006508 ... P07711 19761244 MOAD: Ki=0.511uM
    PDBbind: -logKd/Ki=6.29, Ki=0.511uM
    8472 3h8c:A (2.5) BS01 NSZ 3.4.22.15 GO:0006508 ... P07711 19761244 MOAD: Ki=0.019uM
    PDBbind: -logKd/Ki=7.72, Ki=0.019uM
    8473 3h98:A (1.9) BS01 B5P 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 19500983 MOAD: ic50<0.005uM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    8474 3h9f:A (2.6) BS02 92M 2.7.12.1 GO:0004672 ... P33981 20383151 PDBbind: -logKd/Ki=7.92, Kd=12nM
    BindingDB: IC50=342.2nM
    8475 3h9k:A (2.65) BS01 UFP 2.1.1.45 GO:0000900 ... P04818 21206062 PDBbind: -logKd/Ki=7.85, Ki=14nM
    BindingDB: Ki=14nM
    8476 3h9k:A (2.65) BS02 UFP 2.1.1.45 GO:0000900 ... P04818 21206062 PDBbind: -logKd/Ki=7.85, Ki=14nM
    BindingDB: Ki=14nM
    8477 3h9k:B (2.65) BS01 UFP 2.1.1.45 GO:0000900 ... P04818 21206062 PDBbind: -logKd/Ki=7.85, Ki=14nM
    BindingDB: Ki=14nM
    8478 3h9k:B (2.65) BS02 UFP 2.1.1.45 GO:0000900 ... P04818 21206062 PDBbind: -logKd/Ki=7.85, Ki=14nM
    BindingDB: Ki=14nM
    8479 3h9o:A (2.3) BS01 9BD 2.7.11.1 GO:0004672 ... O15530 19628388 MOAD: ic50=70nM
    PDBbind: -logKd/Ki=7.15, IC50=70nM
    8480 3ha6:A (2.36) BS01 2JZ 2.7.11.1 GO:0000212 ... O14965 19648931 MOAD: ic50=2.1uM
    PDBbind: -logKd/Ki=5.68, IC50=2.1uM
    8481 3hab:A (2.1) BS01 677 3.4.14.5 GO:0001618 ... P27487 19539471 MOAD: ic50=0.0042uM
    PDBbind: -logKd/Ki=8.38, IC50=4.2nM
    BindingDB: IC50=42nM
    8482 3hac:A (2.0) BS01 361 3.4.14.5 GO:0001618 ... P27487 19539471 MOAD: ic50=0.0083uM
    PDBbind: -logKd/Ki=8.17, IC50=6.7nM
    BindingDB: EC50=112nM, IC50=67nM
    8483 3hau:A (1.3) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22158985 MOAD: Kd=0.42uM
    PDBbind: -logKd/Ki=6.38, Kd=0.42uM
    8484 3hav:A (2.45) BS02 SRY ? GO:0005524 ... Q9EVD7 19429619 PDBbind: -logKd/Ki=3.77, Ki=170uM
    8485 3haw:B (1.3) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22158985 MOAD: Kd=1.01uM
    PDBbind: -logKd/Ki=6.00, Kd=1.01uM
    8486 3hb4:X (2.21) BS01 E2B 1.1.1.51
    1.1.1.62    		 GO:0003824 ... P14061 19929851 PDBbind: -logKd/Ki=9.05, Ki=0.9nM
    BindingDB: IC50=27nM
    8487 3hb8:A (2.74) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 21206062 PDBbind: -logKd/Ki=5.12, Kd=7.5uM
    8488 3hb8:B (2.74) BS01 UMP 2.1.1.45 GO:0000900 ... P04818 21206062 PDBbind: -logKd/Ki=5.12, Kd=7.5uM
    8489 3hbo:A (1.71) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22158985 MOAD: Kd=8.2uM
    PDBbind: -logKd/Ki=5.09, Kd=8.2uM
    8490 3hc8:A (1.79) BS01 PD4 3.1.4.35
    3.1.4.53    		 GO:0004114 ... O76074
    P27815    		 19539468 MOAD: ic50=2.9nM
    PDBbind: -logKd/Ki=8.54, IC50=2.9nM
    8491 3hcm:A (2.0) BS03 S45 ? GO:0001726 ... P04271 20077460 PDBbind: -logKd/Ki=3.30, Kd=0.5mM
    8492 3hcm:B (2.0) BS03 S45 ? GO:0001726 ... P04271 20077460 PDBbind: -logKd/Ki=3.30, Kd=0.5mM
    8493 3hd3:A (1.75) BS01 25B 3.4.22.51 GO:0006508 ... P25779 19773167 PDBbind: -logKd/Ki=7.00, IC50=0.1uM
    8494 3hdk:B (1.8) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22158985 MOAD: Kd=17.5uM
    PDBbind: -logKd/Ki=4.76, Kd=17.5uM
    8495 3hdm:A (2.6) BS01 MMG 2.7.11.1 GO:0004672 ... O00141 19497745 PDBbind: -logKd/Ki=7.40, IC50=40nM
    BindingDB: IC50=1300nM
    8496 3hdn:A (3.1) BS01 GMG 2.7.11.1 GO:0004672 ... O00141 19497745 PDBbind: -logKd/Ki=7.20, IC50=63nM
    BindingDB: IC50=880nM
    8497 3hdz:A (1.8) BS01 PD6 3.1.4.35
    3.1.4.53    		 GO:0004114 ... O76074
    P27815    		 19540112 MOAD: ic50=51nM
    PDBbind: -logKd/Ki=7.29, IC50=51nM
    8498 3hec:A (2.5) BS01 STI 2.7.11.24 GO:0000077 ... Q16539 20337484 MOAD: Kd=34uM
    PDBbind: -logKd/Ki=4.47, Kd=34.0uM
    BindingDB: Kd=>10000nM, IC50=100000nM
    8499 3heg:A (2.2) BS01 BAX 2.7.11.24 GO:0000077 ... Q16539 20337484 MOAD: Kd=0.18uM
    PDBbind: -logKd/Ki=6.74, Kd=0.18uM
    BindingDB: Kd=370nM, IC50=400nM
    8500 3hek:A (1.95) BS01 BD0 3.6.4.10 GO:0005524 ... P07900 19583220 MOAD: Ki=5.4nM
    PDBbind: -logKd/Ki=8.27, Ki=5.4nM
    8501 3hf6:A (1.8) BS02 LX0 1.14.16.4 GO:0004497 ... P17752 19631532 MOAD: ic50=0.026uM
    PDBbind: -logKd/Ki=7.59, IC50=0.026uM
    BindingDB: IC50=26nM
    8502 3hf8:A (1.85) BS02 ML0 1.14.16.4 GO:0004497 ... P17752 20556201 MOAD: Ki=0.31uM
    PDBbind: -logKd/Ki=6.51, Ki=0.31uM
    8503 3hfb:A (1.92) BS02 ML4 1.14.16.4 GO:0004497 ... P17752 20556201 MOAD: Ki=0.03uM
    PDBbind: -logKd/Ki=7.52, Ki=0.03uM
    BindingDB: IC50=40nM
    8504 3hfj:A (2.02) BS01 DZ9 N/A GO:0003824 ... N/A 19716475 MOAD: ic50=36uM
    PDBbind: -logKd/Ki=4.44, IC50=36uM
    8505 3hfj:B (2.02) BS01 DZ9 N/A GO:0003824 ... N/A 19716475 PDBbind: -logKd/Ki=4.44, IC50=36uM
    8506 3hfv:A (2.6) BS01 MTY 6.1.1.20 GO:0000049 ... O95363 19549855 PDBbind: -logKd/Ki=4.87, Ki=13.6uM
    8507 3hfz:A (2.9) BS01 MTY 6.1.1.20 GO:0000049 ... Q5SGX2 19549855 PDBbind: -logKd/Ki=4.89, Ki=13uM
    8508 3hha:A (1.27) BS01 NOW 3.4.22.15 GO:0006508 ... P07711 19515558 PDBbind: -logKd/Ki=7.90, IC50=12.6nM
    8509 3hhk:A (1.7) BS01 77Z 3.4.21.98
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... Q99AU2 19515564 MOAD: ic50=6nM
    PDBbind: -logKd/Ki=8.22, IC50=6nM
    8510 3hhm:A (2.8) BS01 KWT 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 19805105 PDBbind: -logKd/Ki=7.92, IC50=11.9nM
    BindingDB: IC50=12nM, Kd=5.4nM, Ki=120nM
    8511 3hhu:A (1.59) BS01 819 3.6.4.10 GO:0005524 ... P07900 19519743 MOAD: ic50=41nM
    PDBbind: -logKd/Ki=7.39, IC50=41nM
    8512 3hig:A (2.09) BS04 BRN 1.4.3.22 GO:0005507 ... P19801 19764817 MOAD: Ki=13nM
    PDBbind: -logKd/Ki=7.89, Ki=13nM
    BindingDB: Ki=13nM
    8513 3hig:B (2.09) BS04 BRN 1.4.3.22 GO:0005507 ... P19801 19764817 MOAD: Ki=13nM
    PDBbind: -logKd/Ki=7.89, Ki=13nM
    BindingDB: Ki=13nM
    8514 3hii:A (2.149) BS04 PNT 1.4.3.22 GO:0005507 ... P19801 19764817 MOAD: Ki=290nM
    PDBbind: -logKd/Ki=6.54, Ki=290nM
    BindingDB: Ki=290nM
    8515 3hii:B (2.149) BS04 PNT 1.4.3.22 GO:0005507 ... P19801 19764817 MOAD: Ki=290nM
    PDBbind: -logKd/Ki=6.54, Ki=290nM
    BindingDB: Ki=290nM
    8516 3hio:A (2.0) BS01 C2X 3.2.2.22 GO:0017148 ... P02879 19920175 PDBbind: -logKd/Ki=6.52, Ki=300nM
    8517 3hit:A (2.29) BS01 DYN 3.2.2.22 GO:0006952 ... Q2QEH4 19920175 MOAD: Ki=6.4nM
    PDBbind: -logKd/Ki=8.19, Ki=6.4nM
    8518 3hiv:A (2.14) BS01 TXN 3.2.2.22 GO:0006952 ... Q2QEH4 19920175 MOAD: Ki=7.5nM
    PDBbind: -logKd/Ki=8.12, Ki=7.5nM
    8519 3hiw:A (1.8) BS01 C2X 3.2.2.22 GO:0006952 ... Q2QEH4 19920175 MOAD: Ki=3.9nM
    PDBbind: -logKd/Ki=8.06, Ki=8.7nM
    8520 3hj0:A (1.34) BS01 A93 ? GO:0005179 ... P02766 20081815 PDBbind: -logKd/Ki=5.71, IC50=1.96uM
    BindingDB: IC50=1960nM
    8521 3hj0:B (1.34) BS01 A93 ? GO:0005179 ... P02766 20081815 PDBbind: -logKd/Ki=5.71, IC50=1.96uM
    BindingDB: IC50=1960nM
    8522 3hjo:A (1.95) BS02 EAA 2.5.1.18 GO:0000302 ... P09211 19780048 PDBbind: -logKd/Ki=6.52, Kd=0.3uM
    BindingDB: IC50=2.6e+4nM
    8523 3hjw:A (2.35) BS01 rna 5.4.99.25 GO:0000495 ... Q7LWY0 19478803 PDBbind: Kd=43nM
    8524 3hjw:A (2.35) BS02 rna 5.4.99.25 GO:0000495 ... Q7LWY0 19478803 PDBbind: Kd=43nM
    8525 3hjw:B (2.35) BS01 rna ? GO:0001522 ... Q8U1R4 19478803 PDBbind: Kd=43nM
    8526 3hjw:C (2.35) BS01 rna ? GO:0001682 ... Q8U160 19478803 PDBbind: Kd=43nM
    8527 3hk1:A (1.7) BS01 B64 ? GO:0005324 ... P04117 19754198 MOAD: Ki=0.67uM
    PDBbind: -logKd/Ki=6.17, Ki=0.67uM
    8528 3hkq:A (1.7) BS02 1SD 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19827837 PDBbind: -logKd/Ki=5.34, Ki=4.55uM
    BindingDB: Ki=4550nM
    8529 3hku:A (1.8) BS02 TOR 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19827837 PDBbind: -logKd/Ki=8.30, Ki=5nM
    BindingDB: Ki=10nM, Kd=290nM, IC50=5nM
    8530 3hkw:A (1.55) BS01 IX6 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26664 20071590 MOAD: Kd=80nM
    PDBbind: -logKd/Ki=8.64, Kd=2.3nM
    8531 3hky:A (1.9) BS01 IX6 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 20071590 MOAD: Kd=2.3nM
    PDBbind: -logKd/Ki=7.10, Kd=80nM
    8532 3hl5:A (1.8) BS02 9JZ 2.3.2.27 N/A P98170 19492850 PDBbind: -logKd/Ki=4.47, Ki=34uM
    BindingDB: Kd=16nM
    8533 3hl5:A (1.8) BS03 9JZ 2.3.2.27 N/A P98170 19492850 PDBbind: -logKd/Ki=4.47, Ki=34uM
    BindingDB: Kd=16nM
    8534 3hl7:A (1.88) BS01 I47 2.7.11.24 GO:0000077 ... Q16539 19496616 MOAD: Ki=0.023uM
    PDBbind: -logKd/Ki=7.64, Ki=23nM
    8535 3hl8:A (1.55) BS01 BBP 3.1.11.1 GO:0000175 ... P04995 20018747 MOAD: Ki=32uM
    PDBbind: -logKd/Ki=4.49, Ki=32uM
    8536 3hll:A (1.95) BS01 I45 2.7.11.24 GO:0000077 ... Q16539 19496616 MOAD: Ki=0.0058uM
    PDBbind: -logKd/Ki=8.24, Ki=5.8nM
    BindingDB: IC50=247nM, Kd=2.8nM, Ki=2.9nM
    8537 3hlo:A (1.6) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 22158985 MOAD: Kd=0.61uM
    PDBbind: -logKd/Ki=6.21, Kd=0.61uM
    8538 3hmm:A (1.7) BS01 855 2.7.11.30 GO:0004672 ... P36897 19285388 MOAD: ic50=0.025uM
    PDBbind: -logKd/Ki=7.60, IC50=0.025uM
    BindingDB: IC50=25nM
    8539 3hmo:A (2.4) BS01 STU 2.7.12.1 GO:0004672 ... P33981 20099905 MOAD: Kd=30.5nM
    PDBbind: -logKd/Ki=7.52, Kd=30.5nM
    8540 3hmp:A (2.3) BS01 CX4 2.7.12.1 GO:0004672 ... P33981 20099905 MOAD: Kd=3.24uM
    PDBbind: -logKd/Ki=5.49, Kd=3.24uM
    8541 3hmv:A (2.23) BS02 HBT 3.1.4.53 GO:0004114 ... Q07343 19525117 PDBbind: -logKd/Ki=7.30, IC50=50.12nM
    BindingDB: IC50=50nM
    8542 3hnb:M (1.15) BS01 768 ? N/A P00451 20089867 PDBbind: -logKd/Ki=5.11, IC50=7.8uM
    BindingDB: IC50=7800nM
    8543 3hng:A (2.7) BS01 8ST 2.7.10.1 GO:0004672 ... P17948 N/A PDBbind: -logKd/Ki=6.74, IC50=0.18uM
    BindingDB: IC50=180nM
    8544 3hnz:A (2.75) BS01 PMN 2.3.1.179 GO:0004315 ... P0AAI5 19581087 PDBbind: -logKd/Ki=7.72, IC50=19nM
    8545 3ho2:A (2.0) BS01 N32 2.3.1.179 GO:0004315 ... P0AAI5 19581087 MOAD: ic50=113nM
    PDBbind: -logKd/Ki=6.95, IC50=113nM
    8546 3ho9:A (1.9) BS01 N3A 2.3.1.179 GO:0004315 ... P0AAI5 19581087 MOAD: ic50=789nM
    PDBbind: -logKd/Ki=6.10, IC50=789nM
    8547 3hp2:A (2.15) BS01 P36 2.7.11.24 GO:0000077 ... Q16539 19751974 PDBbind: -logKd/Ki=6.17, IC50=0.68uM
    BindingDB: IC50=680nM
    8548 3hp5:A (2.3) BS01 52P 2.7.11.24 GO:0000077 ... Q16539 19751974 PDBbind: -logKd/Ki=7.15, IC50=0.07uM
    BindingDB: Kd=2.8nM, IC50=70nM, Ki=0.800000nM
    8549 3hp9:A (1.6) BS01 CF1 3.1.11.1 GO:0000175 ... P04995 20018747 MOAD: Ki=26uM
    PDBbind: -logKd/Ki=4.59, Ki=26uM
    8550 3hpt:B (2.19) BS01 YET 3.4.21.6 GO:0004252 ... P00742 19541481 MOAD: Ki=6.5nM
    PDBbind: -logKd/Ki=8.19, Ki=6.5nM
    BindingDB: IC50=12nM, Ki=6.5nM
    8551 3hq5:A (2.1) BS01 GKK ? N/A P06401 19595590 MOAD: ic50=16nM
    PDBbind: -logKd/Ki=7.80, IC50=16nM
    BindingDB: IC50=16nM, EC50=9nM
    8552 3hqw:A (1.7) BS02 PF4 3.1.4.17 GO:0004114 ... Q9QYJ6 19630403 MOAD: ic50=35nM
    PDBbind: -logKd/Ki=7.46, IC50=35nM
    BindingDB: IC50=35nM
    8553 3hqy:A (2.0) BS02 PF6 3.1.4.17 GO:0004114 ... Q9QYJ6 19630403 MOAD: ic50=11.5nM
    PDBbind: -logKd/Ki=7.94, IC50=11.5nM
    BindingDB: IC50=11.5nM
    8554 3hqz:A (1.7) BS02 PF8 3.1.4.17 GO:0004114 ... Q9QYJ6 19630403 MOAD: ic50=0.42nM
    PDBbind: -logKd/Ki=9.38, IC50=0.42nM
    BindingDB: IC50=0.42nM
    8555 3hr1:A (1.53) BS01 PF9 3.1.4.17 GO:0004114 ... Q9QYJ6 19630403 MOAD: ic50=0.37nM
    PDBbind: -logKd/Ki=9.43, IC50=0.37nM
    BindingDB: IC50=0.5nM, Ki=0.17nM
    8556 3hrb:A (2.2) BS01 I39 2.7.11.24 GO:0000077 ... Q16539 19678708 MOAD: ic50=21nM
    PDBbind: -logKd/Ki=7.68, IC50=21nM
    BindingDB: IC50=21nM
    8557 3hrf:A (1.9) BS02 P47 2.7.11.1 GO:0004672 ... O15530 19718043 MOAD: Kd=10.3uM
    PDBbind: -logKd/Ki=4.99, Kd=10.3uM
    BindingDB: Kd=10300nM, IC50=9.7e+4nM
    8558 3hs4:A (1.1) BS03 AZM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19851004 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    BindingDB: Ki=12nM, Kd=17nM, IC50=10nM
    8559 3hs4:A (1.1) BS04 AZM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19851004 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    BindingDB: Ki=12nM, Kd=17nM, IC50=10nM
    8560 3hs4:A (1.1) BS05 AZM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 19851004 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    BindingDB: Ki=12nM, Kd=17nM, IC50=10nM
    8561 3ht3:A (1.7) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 21454515 PDBbind: Kd=12uM
    8562 3ht3:A (1.7) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 21454515 PDBbind: Kd=12uM
    8563 3ht3:D (1.7) BS01 dna 2.7.7.7 GO:0000166 ... D9N168 21454515 PDBbind: Kd=12uM
    8564 3ht3:D (1.7) BS02 dna 2.7.7.7 GO:0000166 ... D9N168 21454515 PDBbind: Kd=12uM
    8565 3hu1:A (2.81) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113 PDBbind: -logKd/Ki=6.89, Kd=0.13uM
    8566 3hu1:A (2.81) BS02 AGS 3.6.4.6 GO:0005524 ... P55072 20512113 PDBbind: -logKd/Ki=6.89, Kd=0.13uM
    8567 3hu1:B (2.81) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113 PDBbind: -logKd/Ki=6.89, Kd=0.13uM
    8568 3hu1:B (2.81) BS02 AGS 3.6.4.6 GO:0005524 ... P55072 20512113 PDBbind: -logKd/Ki=6.89, Kd=0.13uM
    8569 3hu2:A (2.85) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113 PDBbind: -logKd/Ki=7.22, Kd=0.06uM
    8570 3hu2:A (2.85) BS02 AGS 3.6.4.6 GO:0005524 ... P55072 20512113 PDBbind: -logKd/Ki=7.22, Kd=0.06uM
    8571 3hu2:B (2.85) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113 PDBbind: -logKd/Ki=7.22, Kd=0.06uM
    8572 3hu2:B (2.85) BS02 AGS 3.6.4.6 GO:0005524 ... P55072 20512113 PDBbind: -logKd/Ki=7.22, Kd=0.06uM
    8573 3hu3:A (2.2) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113 MOAD: Kd=0.13uM
    PDBbind: -logKd/Ki=6.89, Kd=0.13uM
    8574 3hu3:B (2.2) BS01 AGS 3.6.4.6 GO:0005524 ... P55072 20512113 MOAD: Kd=0.13uM
    PDBbind: -logKd/Ki=6.89, Kd=0.13uM
    8575 3hub:A (2.25) BS01 469 2.7.11.24 GO:0000077 ... Q16539 20201574 MOAD: Kd=8.2nM
    PDBbind: -logKd/Ki=8.09, Kd=8.2nM
    BindingDB: IC50=9nM, Kd=0.480000nM
    8576 3huc:A (1.8) BS01 G97 2.7.11.24 GO:0000077 ... Q16539 20201574 MOAD: Kd=1030nM
    PDBbind: -logKd/Ki=5.99, Kd=1030nM
    8577 3hv3:A (2.0) BS01 R49 2.7.11.24 GO:0000077 ... Q16539 19928858 MOAD: ic50=900nM
    PDBbind: -logKd/Ki=6.33, IC50=470nM
    BindingDB: IC50=900nM
    8578 3hv4:A (2.6) BS01 L51 2.7.11.24 GO:0000077 ... Q16539 19928858 PDBbind: -logKd/Ki=6.51, IC50=310nM
    BindingDB: IC50=290nM
    8579 3hv5:A (2.25) BS01 R24 2.7.11.24 GO:0000077 ... Q16539 19928858 MOAD: ic50=150nM
    PDBbind: -logKd/Ki=7.02, IC50=95nM
    BindingDB: IC50=95nM
    8580 3hv6:A (1.95) BS01 R39 2.7.11.24 GO:0000077 ... Q16539 19928858 MOAD: ic50=5500nM
    PDBbind: -logKd/Ki=5.64, IC50=2300nM
    BindingDB: IC50=5500nM, koff=0.003900s-1, kon=13000M-1-s-1, Kd=300nM
    8581 3hv7:A (2.4) BS01 1AU 2.7.11.24 GO:0000077 ... Q16539 19928858 MOAD: Kd~12nM
    PDBbind: -logKd/Ki=7.92, Kd=12nM
    BindingDB: Kd=12nM, IC50=170nM
    8582 3hv8:A (1.445) BS01 C2E 3.1.4.52 N/A Q9HUK6 19679088 MOAD: Kd=104.2nM
    PDBbind: -logKd/Ki=6.98, Kd=104.2nM
    8583 3hvc:A (2.1) BS01 GG5 2.7.11.24 GO:0000077 ... Q16539 19501598 MOAD: ic50=600nM
    PDBbind: -logKd/Ki=6.22, IC50=600nM
    BindingDB: Ki=600nM, IC50=67nM
    8584 3hvc:A (2.1) BS02 GG5 2.7.11.24 GO:0000077 ... Q16539 19501598 MOAD: ic50=600nM
    PDBbind: -logKd/Ki=6.22, IC50=600nM
    BindingDB: Ki=600nM, IC50=67nM
    8585 3hvg:A (2.26) BS01 EV0 3.4.23.46 GO:0004190 ... P56817 19799414 MOAD: ic50~2mM
    PDBbind: -logKd/Ki=2.70, IC50=2mM
    BindingDB: Kd=4450000nM
    8586 3hvh:A (1.3) BS01 542 2.1.1.6 GO:0000287 ... P22734 19882607 MOAD: Ki=3nM
    PDBbind: -logKd/Ki=8.52, Ki=3nM
    8587 3hvi:A (1.2) BS02 619 2.1.1.6 GO:0000287 ... P22734 19882607 MOAD: Ki=5nM
    PDBbind: -logKd/Ki=8.30, Ki=5nM
    8588 3hvj:A (1.79) BS01 705 2.1.1.6 GO:0000287 ... P22734 19882607 MOAD: Ki=2nM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    8589 3hvk:A (1.3) BS02 719 2.1.1.6 GO:0000287 ... P22734 19882607 MOAD: Ki=3nM
    PDBbind: -logKd/Ki=8.52, Ki=3nM
    8590 3hw1:A (2.48) BS01 EV2 3.4.23.46 GO:0004190 ... P56817 19799414 MOAD: ic50=0.87mM
    PDBbind: -logKd/Ki=3.06, IC50=0.87mM
    8591 3hwn:A (2.33) BS01 BD3 3.4.22.15 GO:0006508 ... P07711 19616430 PDBbind: -logKd/Ki=8.70, IC50=2nM
    8592 3hww:A (1.95) BS01 AKG 2.2.1.9 GO:0000287 ... P17109 19703421 MOAD: Kd=75nM
    PDBbind: -logKd/Ki=7.12, Kd=75nM
    8593 3hww:D (1.95) BS01 AKG 2.2.1.9 GO:0000287 ... P17109 19703421 MOAD: Kd=75nM
    PDBbind: -logKd/Ki=7.12, Kd=75nM
    8594 3hwx:A (2.6) BS01 TPP 2.2.1.9 GO:0000287 ... P17109 19703421 PDBbind: -logKd/Ki=7.86, Kd=13.9nM
    8595 3hwx:A (2.6) BS03 TPP 2.2.1.9 GO:0000287 ... P17109 19703421 PDBbind: -logKd/Ki=7.86, Kd=13.9nM
    8596 3hwx:B (2.6) BS01 TPP 2.2.1.9 GO:0000287 ... P17109 19703421 PDBbind: -logKd/Ki=7.86, Kd=13.9nM
    8597 3hwx:B (2.6) BS02 TPP 2.2.1.9 GO:0000287 ... P17109 19703421 PDBbind: -logKd/Ki=7.86, Kd=13.9nM
    8598 3hx3:A (1.69) BS01 RET ? GO:0005502 ... P12271 19846785 MOAD: Kd~10nM
    PDBbind: -logKd/Ki=8.00, Kd=10nM
    8599 3hxb:B (2.25) BS01 BD5 2.5.1.60 GO:0003824 ... Q08603 19894725 PDBbind: -logKd/Ki=5.39, IC50=4.1uM
    8600 3hxc:B (1.95) BS03 BD6 2.5.1.60 GO:0003824 ... Q08603 19894725 PDBbind: -logKd/Ki=5.28, IC50=5.2uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218