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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7401 3ccw:A (2.1) BS02 4HI 1.1.1.34 GO:0004420 ... P04035 18540668 PDBbind: -logKd/Ki=7.87, Kd=13.5nM
    7402 3ccw:B (2.1) BS01 4HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=13.5nM
    PDBbind: -logKd/Ki=7.87, Kd=13.5nM
    7403 3ccw:B (2.1) BS02 4HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=13.5nM
    PDBbind: -logKd/Ki=7.87, Kd=13.5nM
    7404 3ccz:A (1.7) BS01 5HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=51.7nM
    PDBbind: -logKd/Ki=7.29, Kd=51.7nM
    7405 3ccz:A (1.7) BS02 5HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=51.7nM
    PDBbind: -logKd/Ki=7.29, Kd=51.7nM
    7406 3ccz:B (1.7) BS01 5HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=51.7nM
    PDBbind: -logKd/Ki=7.29, Kd=51.7nM
    7407 3ccz:B (1.7) BS02 5HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=51.7nM
    PDBbind: -logKd/Ki=7.29, Kd=51.7nM
    7408 3cd0:A (2.4) BS01 6HI 1.1.1.34 GO:0004420 ... P04035 18540668 PDBbind: -logKd/Ki=7.57, Kd=26.9nM
    7409 3cd0:A (2.4) BS02 6HI 1.1.1.34 GO:0004420 ... P04035 18540668 PDBbind: -logKd/Ki=7.57, Kd=26.9nM
    7410 3cd0:B (2.4) BS01 6HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=26.9nM
    PDBbind: -logKd/Ki=7.57, Kd=26.9nM
    7411 3cd0:B (2.4) BS02 6HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=26.9nM
    PDBbind: -logKd/Ki=7.57, Kd=26.9nM
    7412 3cd5:A (2.39) BS01 7HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=12.7nM
    PDBbind: -logKd/Ki=7.90, Kd=12.7nM
    7413 3cd5:A (2.39) BS02 7HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=12.7nM
    PDBbind: -logKd/Ki=7.90, Kd=12.7nM
    7414 3cd5:B (2.39) BS01 7HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=12.7nM
    PDBbind: -logKd/Ki=7.90, Kd=12.7nM
    7415 3cd5:B (2.39) BS02 7HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=12.7nM
    PDBbind: -logKd/Ki=7.90, Kd=12.7nM
    7416 3cd7:A (2.05) BS01 882 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=14.3nM
    PDBbind: -logKd/Ki=7.84, Kd=14.3nM
    BindingDB: IC50=1.8nM
    7417 3cd7:A (2.05) BS02 882 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=14.3nM
    PDBbind: -logKd/Ki=7.84, Kd=14.3nM
    BindingDB: IC50=1.8nM
    7418 3cd7:B (2.05) BS01 882 1.1.1.34 GO:0004420 ... P04035 18540668 PDBbind: -logKd/Ki=7.84, Kd=14.3nM
    BindingDB: IC50=1.8nM
    7419 3cd7:B (2.05) BS02 882 1.1.1.34 GO:0004420 ... P04035 18540668 PDBbind: -logKd/Ki=7.84, Kd=14.3nM
    BindingDB: IC50=1.8nM
    7420 3cd8:A (2.0) BS01 L5G 2.7.10.1 GO:0004672 ... P08581 18426196 MOAD: ic50=9nM
    PDBbind: -logKd/Ki=8.05, IC50=9nM
    BindingDB: IC50=9nM
    7421 3cda:A (2.07) BS01 8HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=26.3nM
    PDBbind: -logKd/Ki=7.58, Kd=26.3nM
    7422 3cda:A (2.07) BS02 8HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=26.3nM
    PDBbind: -logKd/Ki=7.58, Kd=26.3nM
    7423 3cda:B (2.07) BS01 8HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=26.3nM
    PDBbind: -logKd/Ki=7.58, Kd=26.3nM
    7424 3cda:B (2.07) BS02 8HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=26.3nM
    PDBbind: -logKd/Ki=7.58, Kd=26.3nM
    7425 3cdb:A (2.3) BS01 9HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=95.7nM
    PDBbind: -logKd/Ki=7.02, Kd=95.7nM
    7426 3cdb:A (2.3) BS02 9HI 1.1.1.34 GO:0004420 ... P04035 18540668 MOAD: Kd=95.7nM
    PDBbind: -logKd/Ki=7.02, Kd=95.7nM
    7427 3cdb:B (2.3) BS01 9HI 1.1.1.34 GO:0004420 ... P04035 18540668 PDBbind: -logKd/Ki=7.02, Kd=95.7nM
    7428 3cdb:B (2.3) BS02 9HI 1.1.1.34 GO:0004420 ... P04035 18540668 PDBbind: -logKd/Ki=7.02, Kd=95.7nM
    7429 3cde:A (2.1) BS01 N3H 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18457949 MOAD: ic50<0.01uM
    PDBbind: -logKd/Ki=7.66, IC50=22nM
    BindingDB: IC50=<10nM, EC50=5nM
    7430 3ce0:A (2.8) BS01 P34 2.4.2.- GO:0003950 ... Q9Y6F1 19354255 PDBbind: -logKd/Ki=6.15, Kd=0.7uM
    BindingDB: IC50=1430nM
    7431 3ce3:A (2.4) BS01 1FN 2.7.10.1 GO:0004672 ... P08581 18690676 MOAD: ic50=1.8nM
    PDBbind: -logKd/Ki=8.74, IC50=1.8nM
    BindingDB: IC50=1.8nM
    7432 3cen:A (1.6) BS01 FXA 3.4.21.6 GO:0004252 ... P00742 18424044 MOAD: Ki=5.5nM
    PDBbind: -logKd/Ki=8.26, Ki=5.5nM
    BindingDB: Ki=5.5nM
    7433 3cf1:A (4.4) BS01 ADP 3.6.4.6 GO:0000502 ... Q01853 18462676 PDBbind: -logKd/Ki=6.64, Kd=230nM
    7434 3cf1:A (4.4) BS02 ADP 3.6.4.6 GO:0000502 ... Q01853 18462676 PDBbind: -logKd/Ki=6.64, Kd=230nM
    7435 3cf8:A (2.4) BS01 QUE 4.2.1.59 GO:0005737 ... Q5G940 18780820 MOAD: Ki=12.7uM
    PDBbind: -logKd/Ki=4.90, Ki=12.7uM
    7436 3cf8:B (2.4) BS01 QUE 4.2.1.59 GO:0005737 ... Q5G940 18780820 PDBbind: -logKd/Ki=4.90, Ki=12.7uM
    7437 3cf9:A (2.6) BS01 AGI 4.2.1.59 GO:0005737 ... Q5G940 18780820 PDBbind: -logKd/Ki=4.83, Ki=14.9uM
    7438 3cf9:B (2.6) BS01 AGI 4.2.1.59 GO:0005737 ... Q5G940 18780820 PDBbind: -logKd/Ki=4.83, Ki=14.9uM
    7439 3cfn:A (1.87) BS01 2AN ? GO:0005179 ... P02766 19954984 MOAD: Kd=4.3uM
    PDBbind: -logKd/Ki=5.00, Kd=10uM
    BindingDB: Kd=1100nM
    7440 3cfn:B (1.87) BS01 2AN ? GO:0005179 ... P02766 19954984 MOAD: Kd=4.3uM
    PDBbind: -logKd/Ki=5.00, Kd=10uM
    BindingDB: Kd=1100nM
    7441 3cft:A (1.87) BS01 5NS ? GO:0005179 ... P02766 19954984 MOAD: Kd=64uM
    PDBbind: -logKd/Ki=4.19, Kd=64uM
    BindingDB: Kd=64000nM
    7442 3cft:B (1.87) BS01 5NS ? GO:0005179 ... P02766 19954984 MOAD: Kd=64uM
    PDBbind: -logKd/Ki=4.19, Kd=64uM
    BindingDB: Kd=64000nM
    7443 3cft:B (1.87) BS02 5NS ? GO:0005179 ... P02766 19954984 MOAD: Kd=64uM
    PDBbind: -logKd/Ki=4.19, Kd=64uM
    BindingDB: Kd=64000nM
    7444 3cgf:A (3.0) BS01 JNF 2.7.11.24 GO:0004672 ... P53779 18482836 PDBbind: -logKd/Ki=6.57, IC50=270nM
    BindingDB: IC50=3nM
    7445 3cgo:A (3.0) BS01 JNO 2.7.11.24 GO:0004672 ... P53779 18482836 PDBbind: -logKd/Ki=5.52, IC50=3uM
    BindingDB: IC50=270nM
    7446 3cgy:A (2.6) BS01 RDC 2.7.13.3
    3.1.3.-    		 GO:0016310 ... P0DM80 18440021 PDBbind: -logKd/Ki=3.15, Kd=715uM
    BindingDB: Kd=715000nM
    7447 3ch9:A (2.2) BS01 XRG 3.2.1.14 GO:0004553 ... Q873X9 18355729 MOAD: ic50=500uM
    PDBbind: -logKd/Ki=3.30, IC50=500uM
    7448 3chc:A (1.9) BS01 ZRG 3.2.1.14 GO:0004553 ... Q873X9 18355729 MOAD: ic50=81uM
    PDBbind: -logKd/Ki=4.09, IC50=81uM
    7449 3chd:A (2.0) BS01 WRG 3.2.1.14 GO:0004553 ... Q873X9 18355729 MOAD: ic50=12uM
    PDBbind: -logKd/Ki=4.92, IC50=12uM
    BindingDB: IC50=1.2e+4nM
    7450 3chg:D (2.8) BS01 313 ? GO:0005886 ... P46922 18567662 PDBbind: -logKd/Ki=3.99, Kd=102uM
    7451 3cho:A (1.8) BS02 4BG 3.3.2.6
    3.4.11.4    		 GO:0003723 ... P09960 18394906 MOAD: ic50=280nM
    PDBbind: -logKd/Ki=6.55, IC50=280nM
    BindingDB: IC50=300nM
    7452 3chp:A (2.1) BS02 4BO 3.3.2.6
    3.4.11.4    		 GO:0003723 ... P09960 18394906 MOAD: ic50=5400nM
    PDBbind: -logKd/Ki=5.27, IC50=5400nM
    BindingDB: IC50=5400nM
    7453 3chq:A (2.09) BS02 4BQ 3.3.2.6
    3.4.11.4    		 GO:0003723 ... P09960 18394906 MOAD: ic50=20nM
    PDBbind: -logKd/Ki=7.70, IC50=20nM
    BindingDB: IC50=20nM
    7454 3chr:A (2.2) BS02 4BS 3.3.2.6
    3.4.11.4    		 GO:0003723 ... P09960 18394906 MOAD: ic50=61nM
    PDBbind: -logKd/Ki=7.21, IC50=61nM
    BindingDB: IC50=61nM
    7455 3chs:A (2.55) BS02 4BU 3.3.2.6
    3.4.11.4    		 GO:0003723 ... P09960 18394906 PDBbind: -logKd/Ki=7.77, IC50=17nM
    7456 3cib:A (1.72) BS01 314 3.4.23.46 GO:0004190 ... P56817 18468890 MOAD: ic50=14nM
    PDBbind: -logKd/Ki=7.85, IC50=14nM
    BindingDB: IC50=522nM
    7457 3cic:A (1.75) BS01 316 3.4.23.46 GO:0004190 ... P56817 18468890 MOAD: ic50=3nM
    PDBbind: -logKd/Ki=8.52, IC50=3nM
    BindingDB: IC50=300nM, Ki=3nM
    7458 3cid:A (1.8) BS01 318 3.4.23.46 GO:0004190 ... P56817 18468890 MOAD: ic50=5nM
    PDBbind: -logKd/Ki=8.30, IC50=5nM
    BindingDB: IC50=5nM
    7459 3cj2:A (1.75) BS01 SX3 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18400495 MOAD: Kd=14uM
    PDBbind: -logKd/Ki=4.85, Kd=14uM
    7460 3cj3:A (1.87) BS01 SX4 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18400495 MOAD: ic50=57uM
    PDBbind: -logKd/Ki=4.24, IC50=57uM
    7461 3cj4:A (2.07) BS01 SX5 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18400495 MOAD: Kd=0.31uM
    PDBbind: -logKd/Ki=6.51, Kd=0.31uM
    7462 3cj5:A (1.92) BS01 SX6 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18400495 MOAD: Kd=0.46uM
    PDBbind: -logKd/Ki=6.34, Kd=0.46uM
    7463 3cjf:A (2.15) BS01 SAV 2.7.10.1 GO:0004672 ... P35968 18620382 MOAD: ic50=6.3nM
    PDBbind: -logKd/Ki=8.20, IC50=6.3nM
    BindingDB: IC50=6.3nM
    7464 3cjo:A (2.28) BS02 K30 ? GO:0003777 ... P52732 18578472 MOAD: ic50=2.2nM
    PDBbind: -logKd/Ki=8.66, IC50=2.2nM
    7465 3cke:A (2.4) BS01 FDF 4.2.3.9 GO:0016829 ... Q9UR08 18385128 PDBbind: -logKd/Ki=6.10, Ki=0.8uM
    7466 3ckp:A (2.3) BS01 012 3.4.23.46 GO:0004190 ... P56817 18434152 MOAD: Ki=0.449uM
    PDBbind: -logKd/Ki=6.35, Ki=0.449uM
    7467 3ckr:A (2.7) BS01 009 3.4.23.46 GO:0004190 ... P56817 18434152 PDBbind: -logKd/Ki=5.30, Ki=5.001uM
    7468 3ckt:A (1.65) BS01 YDP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 21762812 MOAD: Ki=0.48uM
    PDBbind: -logKd/Ki=6.32, Ki=0.48uM
    7469 3ckt:B (1.65) BS01 YDP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 21762812 PDBbind: -logKd/Ki=6.32, Ki=0.48uM
    7470 3ckz:A (1.9) BS02 ZMR 3.2.1.18 GO:0004308 ... Q6DPL2 18480754 MOAD: Ki=0.19nM
    PDBbind: -logKd/Ki=8.72, Ki=1.9nM
    7471 3cl0:A (2.2) BS01 G39 3.2.1.18 GO:0004308 ... Q6DPL2 18480754 MOAD: Ki=84.8nM
    PDBbind: -logKd/Ki=7.07, Ki=84.8nM
    7472 3cl2:A (2.538) BS01 G39 3.2.1.18 GO:0004308 ... Q6DPL2 18480754 PDBbind: -logKd/Ki=7.59, Ki=25.9nM
    7473 3clp:A (2.0) BS01 CMP ? GO:0005221 ... Q98GN8 18619611 PDBbind: -logKd/Ki=3.69, Kd=205.1uM
    7474 3cm2:D (2.5) BS02 X23 2.3.2.27 N/A P98170 18851976 MOAD: Ki=340nM
    PDBbind: -logKd/Ki=6.47, Ki=340nM
    BindingDB: IC50=110nM
    7475 3cm7:B (3.1) BS02 X22 2.3.2.27 N/A P98170 18851976 PDBbind: -logKd/Ki=6.57, IC50=270nM
    BindingDB: IC50=290nM
    7476 3cn0:A (1.52) BS01 LJ1 ? GO:0005179 ... P02766 18811132 PDBbind: -logKd/Ki=5.51, IC50=3.08uM
    BindingDB: IC50=3080nM
    7477 3cn0:B (1.52) BS01 LJ1 ? GO:0005179 ... P02766 18811132 PDBbind: -logKd/Ki=5.51, IC50=3.08uM
    BindingDB: IC50=3080nM
    7478 3co6:C (2.1) BS01 dna ? GO:0003700 ... Q12778 18786403 PDBbind: Kd=60nM
    7479 3co6:C (2.1) BS02 dna ? GO:0003700 ... Q12778 18786403 PDBbind: Kd=60nM
    7480 3co7:C (2.91) BS01 dna ? GO:0003700 ... Q12778 18786403 PDBbind: Kd=12nM
    7481 3co7:C (2.91) BS02 dna ? GO:0003700 ... Q12778 18786403 PDBbind: Kd=12nM
    7482 3co7:F (2.91) BS01 dna ? GO:0003700 ... Q12778 18786403 PDBbind: Kd=12nM
    7483 3co7:F (2.91) BS02 dna ? GO:0003700 ... Q12778 18786403 PDBbind: Kd=12nM
    7484 3co9:A (2.1) BS01 3MS 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18487044 PDBbind: -logKd/Ki=8.00, IC50=10nM
    BindingDB: IC50=<10nM, EC50=8.5nM
    7485 3coa:C (2.2) BS01 dna ? GO:0003700 ... Q12778 18786403 PDBbind: Kd=128nM
    7486 3coa:C (2.2) BS02 dna ? GO:0003700 ... Q12778 18786403 PDBbind: Kd=128nM
    7487 3coa:F (2.2) BS01 dna ? GO:0003700 ... Q12778 18786403 PDBbind: Kd=128nM
    7488 3coa:F (2.2) BS02 dna ? GO:0003700 ... Q12778 18786403 PDBbind: Kd=128nM
    7489 3coh:A (2.7) BS01 83H 2.7.11.1 GO:0004672 ... O14965 18630890 PDBbind: -logKd/Ki=8.40, IC50=4nM
    7490 3coq:A (2.4) BS01 dna ? GO:0000981 ... P04386 18611375 PDBbind: Kd=24.6nM
    7491 3coq:A (2.4) BS02 dna ? GO:0000981 ... P04386 18611375 PDBbind: Kd=24.6nM
    7492 3coq:B (2.4) BS01 dna ? GO:0000981 ... P04386 18611375 PDBbind: Kd=24.6nM
    7493 3coq:B (2.4) BS02 dna ? GO:0000981 ... P04386 18611375 PDBbind: Kd=24.6nM
    7494 3cow:A (1.8) BS01 52H 6.3.2.1 GO:0000287 ... P9WIL5 18821554 MOAD: Kd=0.125uM
    PDBbind: -logKd/Ki=6.90, Kd=0.125uM
    BindingDB: Ki=270nM
    7495 3coy:A (2.03) BS01 53H 6.3.2.1 GO:0000287 ... P9WIL5 18821554 MOAD: Kd=0.96uM
    PDBbind: -logKd/Ki=6.02, Kd=0.96uM
    BindingDB: Ki=300nM
    7496 3coz:A (2.0) BS01 54H 6.3.2.1 GO:0000287 ... P9WIL5 18821554 MOAD: Kd=2.7uM
    PDBbind: -logKd/Ki=5.57, Kd=2.7uM
    7497 3cp9:A (2.5) BS01 C19 2.7.10.1 GO:0004672 ... P35968 18447379 PDBbind: -logKd/Ki=7.32, IC50=0.048uM
    BindingDB: IC50=48nM
    7498 3cpb:A (2.7) BS01 C92 2.7.10.1 GO:0004672 ... P35968 18447379 PDBbind: -logKd/Ki=4.60, IC50=25uM
    BindingDB: IC50=>25000nM
    7499 3cpc:A (2.4) BS01 C52 2.7.10.1 GO:0004672 ... P35968 18447379 PDBbind: -logKd/Ki=5.30, IC50=5uM
    BindingDB: IC50=>5000nM
    7500 3cph:A (2.9) BS01 GDP ? GO:0000131 ... P07560 18426803 PDBbind: -logKd/Ki=6.48, Kd=0.33uM
    7501 3cpj:B (2.35) BS01 GDP ? GO:0000139 ... P38555 18426803 PDBbind: -logKd/Ki=4.72, Kd=18.9uM
    7502 3cqu:A (2.2) BS02 CQU 2.7.11.1 GO:0004672 ... P31749 18456494 MOAD: ic50=151nM
    PDBbind: -logKd/Ki=6.82, IC50=151nM
    BindingDB: IC50=151nM
    7503 3cqw:A (2.0) BS03 CQW 2.7.11.1 GO:0004672 ... P31749 18456494 MOAD: ic50=42nM
    PDBbind: -logKd/Ki=7.38, IC50=42nM
    7504 3cr4:X (2.15) BS01 PNT ? GO:0005509 ... P02638 18602402 MOAD: Kd=53uM
    PDBbind: -logKd/Ki=4.28, Kd=53uM
    7505 3cr4:X (2.15) BS02 PNT ? GO:0005509 ... P02638 18602402 MOAD: Kd=53uM
    PDBbind: -logKd/Ki=4.28, Kd=53uM
    7506 3cr5:X (1.85) BS01 PNT ? GO:0005509 ... P02638 18602402 MOAD: Kd=64uM
    PDBbind: -logKd/Ki=4.19, Kd=64uM
    7507 3cr5:X (1.85) BS02 PNT ? GO:0005509 ... P02638 18602402 MOAD: Kd=64uM
    PDBbind: -logKd/Ki=4.19, Kd=64uM
    7508 3cs7:A (2.2) BS02 LG0 3.4.21.6 GO:0004252 ... P00742 18550370 MOAD: Ki=0.021nM
    PDBbind: -logKd/Ki=10.68, Ki=21pM
    BindingDB: Ki=0.021nM
    7509 3cso:A (2.71) BS01 XNI 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O92972 18852280 PDBbind: -logKd/Ki=5.77, Ki=1.7uM
    7510 3cst:A (3.2) BS01 E52 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0016301 ... P48736 18484710 PDBbind: -logKd/Ki=7.41, IC50=0.039uM
    7511 3cth:A (2.3) BS01 319 2.7.10.1 GO:0004672 ... P08581 18479916 MOAD: ic50=0.035uM
    PDBbind: -logKd/Ki=6.96, IC50=0.11uM
    BindingDB: IC50=35nM
    7512 3ctj:A (2.5) BS01 320 2.7.10.1 GO:0004672 ... P08581 18479916 MOAD: ic50=0.11uM
    PDBbind: -logKd/Ki=7.46, IC50=0.035uM
    BindingDB: IC50=110nM
    7513 3ctq:A (1.95) BS01 337 2.7.11.24 GO:0000077 ... Q16539 18462940 MOAD: ic50=40nM
    PDBbind: -logKd/Ki=7.40, IC50=40nM
    7514 3ctr:A (2.1) BS01 MGP 3.1.13.4 GO:0003676 ... O95453 18694759 MOAD: Kd=6.94uM
    PDBbind: -logKd/Ki=5.16, Kd=6.94uM
    7515 3ctt:A (2.1) BS01 3CU 3.2.1.20 GO:0003824 ... O43451 19123216 MOAD: Ki=0.45uM
    PDBbind: -logKd/Ki=6.35, Ki=0.45uM
    7516 3cvk:A (2.31) BS01 N34 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18722768 MOAD: ic50<0.01uM
    PDBbind: -logKd/Ki=8.00, IC50=0.01uM
    7517 3cvv:A (2.1) BS01 dna ? GO:0000166 ... Q8SXK5 19570997 PDBbind: Kd=8.6uM
    7518 3cvv:A (2.1) BS02 dna ? GO:0000166 ... Q8SXK5 19570997 PDBbind: Kd=8.6uM
    7519 3cwe:A (1.6) BS01 825 3.1.3.48 GO:0004725 ... P18031 18477508 MOAD: ic50=0.12uM
    PDBbind: -logKd/Ki=6.92, IC50=0.12uM
    BindingDB: IC50=120nM, EC50=1200nM
    7520 3cwj:A (2.4) BS01 321 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18662878 MOAD: ic50<0.01uM
    PDBbind: -logKd/Ki=8.00, IC50=10nM
    BindingDB: IC50=<10nM, EC50=11nM
    7521 3cwk:A (1.6) BS01 REA ? GO:0001972 ... P29373 19018099 MOAD: Kd=250nM
    PDBbind: -logKd/Ki=6.60, Kd=250nM
    7522 3cx9:A (2.8) BS01 LPX ? GO:0003677 ... P02768 19601929 PDBbind: -logKd/Ki=4.89, Kd=12.9uM
    7523 3cxc:1 (3.0) BS01 rna ? GO:0003735 ... P22452 18947996 PDBbind: IC50=4.6uM
    7524 3cxc:2 (3.0) BS01 rna ? GO:0000049 ... P32411 18947996 PDBbind: IC50=4.6uM
    7525 3cxc:A (3.0) BS01 rna ? GO:0002181 ... P20276 18947996 PDBbind: IC50=4.6uM
    7526 3cxc:B (3.0) BS01 rna ? GO:0003723 ... P20279 18947996 PDBbind: IC50=4.6uM
    7527 3cxc:C (3.0) BS01 rna ? GO:0003723 ... P12735 18947996 PDBbind: IC50=4.6uM
    7528 3cxc:D (3.0) BS01 rna ? GO:0000049 ... P14124 18947996 PDBbind: IC50=4.6uM
    7529 3cxc:D (3.0) BS02 rna ? GO:0000049 ... P14124 18947996 PDBbind: IC50=4.6uM
    7530 3cxc:E (3.0) BS01 rna ? GO:0002181 ... P14135 18947996 PDBbind: IC50=4.6uM
    7531 3cxc:F (3.0) BS01 rna ? GO:0001682 ... P12743 18947996 PDBbind: IC50=4.6uM
    7532 3cxc:H (3.0) BS01 rna N/A GO:0003735 ... N/A 18947996 PDBbind: IC50=4.6uM
    7533 3cxc:I (3.0) BS01 rna ? GO:0003729 ... P29198 18947996 PDBbind: IC50=4.6uM
    7534 3cxc:J (3.0) BS01 rna ? GO:0003735 ... P22450 18947996 PDBbind: IC50=4.6uM
    7535 3cxc:K (3.0) BS01 rna ? GO:0003735 ... P12737 18947996 PDBbind: IC50=4.6uM
    7536 3cxc:L (3.0) BS01 rna N/A GO:0003735 ... N/A 18947996 PDBbind: IC50=4.6uM
    7537 3cxc:M (3.0) BS01 rna ? GO:0000027 ... P14123 18947996 PDBbind: IC50=4.6uM
    7538 3cxc:M (3.0) BS02 rna ? GO:0000027 ... P14123 18947996 PDBbind: IC50=4.6uM
    7539 3cxc:N (3.0) BS01 rna ? GO:0003723 ... P12733 18947996 PDBbind: IC50=4.6uM
    7540 3cxc:O (3.0) BS01 rna ? GO:0003723 ... P14119 18947996 PDBbind: IC50=4.6uM
    7541 3cxc:P (3.0) BS01 rna ? GO:0003735 ... P12734 18947996 PDBbind: IC50=4.6uM
    7542 3cxc:P (3.0) BS02 rna ? GO:0003735 ... P12734 18947996 PDBbind: IC50=4.6uM
    7543 3cxc:Q (3.0) BS01 rna ? GO:0002181 ... P10970 18947996 PDBbind: IC50=4.6uM
    7544 3cxc:R (3.0) BS01 rna ? GO:0000027 ... P12732 18947996 PDBbind: IC50=4.6uM
    7545 3cxc:S (3.0) BS01 rna ? GO:0002181 ... P10972 18947996 PDBbind: IC50=4.6uM
    7546 3cxc:T (3.0) BS01 rna ? GO:0003735 ... P14116 18947996 PDBbind: IC50=4.6uM
    7547 3cxc:U (3.0) BS01 rna ? GO:0003735 ... P10971 18947996 PDBbind: IC50=4.6uM
    7548 3cxc:V (3.0) BS01 rna ? GO:0000463 ... P14121 18947996 PDBbind: IC50=4.6uM
    7549 3cxc:V (3.0) BS02 rna ? GO:0000463 ... P14121 18947996 PDBbind: IC50=4.6uM
    7550 3cxc:W (3.0) BS01 rna ? GO:0002181 ... P18138 18947996 PDBbind: IC50=4.6uM
    7551 3cxc:X (3.0) BS01 rna ? GO:0000166 ... P12736 18947996 PDBbind: IC50=4.6uM
    7552 3cxc:Y (3.0) BS01 rna N/A GO:0003735 ... N/A 18947996 PDBbind: IC50=4.6uM
    7553 3cxc:Z (3.0) BS01 rna ? GO:0003723 ... P32410 18947996 PDBbind: IC50=4.6uM
    7554 3cy2:A (2.01) BS02 MB9 2.7.11.1 GO:0004672 ... P11309 22136433 MOAD: ic50=60nM
    PDBbind: -logKd/Ki=7.22, IC50=60nM
    7555 3cyu:A (1.7) BS02 0CR 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 18461940 MOAD: Kd=60nM
    PDBbind: -logKd/Ki=7.22, Kd=60nM
    7556 3cyw:A (1.4) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 MOAD: Ki=17nM
    PDBbind: -logKd/Ki=7.77, Ki=17nM
    7557 3cyw:B (1.4) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 PDBbind: -logKd/Ki=7.77, Ki=17nM
    7558 3cyx:A (1.2) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    7559 3cyx:B (1.2) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 PDBbind: -logKd/Ki=8.00, Ki=10nM
    7560 3cyz:A (1.8) BS01 9OD ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=60nM
    PDBbind: -logKd/Ki=7.22, Kd=60.0nM
    7561 3cyz:B (1.8) BS01 9OD ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=60nM
    PDBbind: -logKd/Ki=7.22, Kd=60.0nM
    7562 3cyz:B (1.8) BS02 9OD ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=60nM
    PDBbind: -logKd/Ki=7.22, Kd=60.0nM
    7563 3cz1:A (1.5) BS01 NBB ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=55nM
    PDBbind: -logKd/Ki=7.26, Kd=55.0nM
    7564 3cz1:B (1.5) BS01 NBB ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=55nM
    PDBbind: -logKd/Ki=7.26, Kd=55.0nM
    7565 3cz1:B (1.5) BS02 NBB ? GO:0005549 ... Q9U9J6 19481550 MOAD: Kd=55nM
    PDBbind: -logKd/Ki=7.26, Kd=55.0nM
    7566 3czv:A (2.0) BS02 AZM 4.2.1.1 GO:0004089 ... Q8N1Q1 18618712 MOAD: Ki=16nM
    PDBbind: -logKd/Ki=7.80, Ki=16nM
    BindingDB: Ki=17nM, Kd=50nM
    7567 3d04:A (2.4) BS01 SAK 4.2.1.59 GO:0005737 ... Q5G940 18780820 MOAD: Ki=0.9uM
    PDBbind: -logKd/Ki=6.05, Ki=0.9uM
    7568 3d04:B (2.4) BS01 SAK 4.2.1.59 GO:0005737 ... Q5G940 18780820 PDBbind: -logKd/Ki=6.05, Ki=0.9uM
    7569 3d0b:A (1.74) BS01 SNX 3.6.4.10 GO:0005524 ... P07900 18511277 MOAD: Kd=0.29uM
    PDBbind: -logKd/Ki=6.54, Kd=0.29uM
    7570 3d0e:A (2.0) BS01 G93 2.7.11.1 GO:0004672 ... P31751 18800763 MOAD: ic50=13nM
    PDBbind: -logKd/Ki=8.40, Ki=4nM
    BindingDB: IC50=13nM, Kd=2.1nM, Ki=4nM
    7571 3d14:A (1.9) BS01 AK1 2.7.11.1 GO:0004672 ... P97477 18678489 MOAD: ic50=22nM
    PDBbind: -logKd/Ki=7.66, IC50=22nM
    BindingDB: IC50=22nM
    7572 3d1g:A (1.64) BS01 322 2.7.7.7 GO:0003677 ... P0A988 18678908 MOAD: Ki~10uM
    PDBbind: -logKd/Ki=5.00, Ki=10uM
    7573 3d1v:A (2.7) BS01 D1V 2.4.2.1 GO:0000255 ... P00491 18790691 PDBbind: -logKd/Ki=3.49, Kd=0.324mM
    7574 3d1x:A (1.05) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 MOAD: Ki=2.2nM
    PDBbind: -logKd/Ki=8.66, Ki=2.2nM
    7575 3d1x:B (1.05) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 PDBbind: -logKd/Ki=8.66, Ki=2.2nM
    7576 3d1y:A (1.05) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 MOAD: Ki=6nM
    PDBbind: -logKd/Ki=8.22, Ki=6nM
    7577 3d1y:B (1.05) BS01 ROC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 PDBbind: -logKd/Ki=8.22, Ki=6nM
    7578 3d1z:A (1.3) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 PDBbind: -logKd/Ki=8.80, Ki=1.6nM
    7579 3d1z:B (1.3) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 MOAD: Ki=1.6nM
    PDBbind: -logKd/Ki=8.80, Ki=1.6nM
    7580 3d20:A (1.05) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 MOAD: Ki=5nM
    PDBbind: -logKd/Ki=8.30, Ki=5nM
    7581 3d20:B (1.05) BS01 017 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 18597780 PDBbind: -logKd/Ki=8.30, Ki=5nM
    7582 3d27:A (2.2) BS03 W29 3.4.11.18 GO:0004177 ... P0AE18 18785729 MOAD: ic50=55.7uM
    PDBbind: -logKd/Ki=4.25, IC50=55.7uM
    7583 3d28:A (2.3) BS01 B34 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 18554907 MOAD: ic50=1.4uM
    PDBbind: -logKd/Ki=5.85, IC50=1.4uM
    7584 3d2e:A (2.35) BS01 ATP ? GO:0005524 ... P32589 18555782 PDBbind: -logKd/Ki=6.42, Kd=0.38uM
    7585 3d2r:A (2.03) BS01 ADP 2.7.11.2 GO:0004672 ... Q16654 18658136 MOAD: Kd=3.3uM
    PDBbind: -logKd/Ki=5.48, Kd=3.3uM
    7586 3d2s:A (1.7) BS01 rna ? GO:0046872 ... Q9NR56 19043415 PDBbind: Kd=140nM
    7587 3d2s:B (1.7) BS01 rna ? GO:0046872 ... Q9NR56 19043415 PDBbind: Kd=140nM
    7588 3d2s:C (1.7) BS01 rna ? GO:0046872 ... Q9NR56 19043415 PDBbind: Kd=140nM
    7589 3d2s:D (1.7) BS01 rna ? GO:0046872 ... Q9NR56 19043415 PDBbind: Kd=140nM
    7590 3d2t:A (1.85) BS01 1FL ? GO:0005179 ... P02766 14711308 MOAD: Kd=75nM
    PDBbind: -logKd/Ki=7.12, Kd=75nM
    BindingDB: IC50=12000nM, Kd=407nM, EC50=5600nM
    7591 3d2t:B (1.85) BS01 1FL ? GO:0005179 ... P02766 14711308 MOAD: Kd=75nM
    PDBbind: -logKd/Ki=7.12, Kd=75nM
    BindingDB: IC50=12000nM, Kd=407nM, EC50=5600nM
    7592 3d2w:A (1.65) BS01 dna ? GO:0003676 ... Q921F2 19174564 PDBbind: Kd=137.5nM
    7593 3d3p:A (1.75) BS02 20A 3.1.4.53 GO:0004114 ... Q07343 18539455 MOAD: ic50=3.1nM
    PDBbind: -logKd/Ki=8.50, IC50=3.16nM
    BindingDB: IC50=3.16nM
    7594 3d45:A (3.0) BS01 7MG 3.1.13.4 GO:0003676 ... Q8VDG3 19217398 PDBbind: -logKd/Ki=5.68, Kd=2.1uM
    7595 3d45:B (3.0) BS01 7MG 3.1.13.4 GO:0003676 ... Q8VDG3 19217398 PDBbind: -logKd/Ki=5.68, Kd=2.1uM
    7596 3d4f:A (1.55) BS02 LN1 3.5.2.6 GO:0008800 ... P0AD64 18955486 PDBbind: -logKd/Ki=7.72, Kd=19nM
    7597 3d4l:A (2.0) BS01 605 3.4.14.5 GO:0001618 ... P27487 18524582 MOAD: ic50=32nM
    PDBbind: -logKd/Ki=7.49, IC50=32nM
    BindingDB: IC50=32nM
    7598 3d4q:A (2.8) BS01 SM5 2.7.11.1 GO:0004672 ... P15056 18676143 PDBbind: -logKd/Ki=10.52, IC50=0.03nM
    BindingDB: IC50=0.030000nM
    7599 3d4y:A (1.52) BS02 MVL 3.2.1.114 GO:0000139 ... Q24451 18759458 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2uM
    7600 3d4z:A (1.39) BS02 GIM 3.2.1.114 GO:0000139 ... Q24451 18759458 MOAD: Ki=13uM
    PDBbind: -logKd/Ki=4.89, Ki=13uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218