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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3601 2ata:C (2.2) BS02 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=84nM
    3602 2ata:C (2.2) BS03 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=84nM
    3603 2ata:D (2.2) BS01 dna ? GO:0000976 ... P04637 16793544 PDBbind: Kd=84nM
    3604 2ate:A (1.8) BS01 NIA 5.4.99.18 GO:0003824 ... P0AG18 17298082 PDBbind: -logKd/Ki=7.07, Kd=86nM
    3605 2ath:A (2.28) BS01 3EA ? GO:0003677 ... P37231 16366601 MOAD: ic50=0.152uM
    PDBbind: -logKd/Ki=6.82, IC50=0.152uM
    BindingDB: IC50=152nM, EC50=230nM
    3606 2aux:A (2.4) BS01 CT1 3.4.22.38 GO:0006508 ... P43235 16290936 PDBbind: -logKd/Ki=9.30, IC50=0.50nM
    BindingDB: IC50=0.500000nM
    3607 2auz:A (2.3) BS01 CT2 3.4.22.38 GO:0006508 ... P43235 16290936 PDBbind: -logKd/Ki=9.46, IC50=0.35nM
    BindingDB: IC50=0.350000nM
    3608 2avi:A (3.0) BS01 BTN ? GO:0005576 ... P02701 8506353 PDBbind: -logKd/Ki=15.22, Kd=0.6fM
    3609 2avm:A (1.1) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 16277992 PDBbind: -logKd/Ki=5.70, Ki=2.0uM
    3610 2avm:B (1.1) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 16277992 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2.0uM
    3611 2avo:A (1.1) BS01 MK1 3.4.23.16 GO:0004190 ... Q7SSI0 16277992 PDBbind: -logKd/Ki=8.85, Ki=1.40nM
    3612 2avo:B (1.1) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 16277992 MOAD: Ki=1.4nM
    PDBbind: -logKd/Ki=8.85, Ki=1.40nM
    3613 2avq:A (1.3) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 16277992 PDBbind: -logKd/Ki=4.39, Ki=41uM
    3614 2avq:B (1.3) BS01 2NC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 16277992 MOAD: Ki=41uM
    PDBbind: -logKd/Ki=4.39, Ki=41uM
    3615 2avs:A (1.1) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 16277992 PDBbind: -logKd/Ki=7.57, Ki=27.0nM
    3616 2avs:B (1.1) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 16277992 MOAD: Ki=27nM
    PDBbind: -logKd/Ki=7.57, Ki=27.0nM
    3617 2avv:A (1.5) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 16277992 MOAD: Ki=0.55nM
    PDBbind: -logKd/Ki=9.26, Ki=0.55nM
    3618 2avv:B (1.5) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 16277992 PDBbind: -logKd/Ki=9.26, Ki=0.55nM
    3619 2aw1:A (1.46) BS03 COX 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 16290146 MOAD: Ki=43nM
    PDBbind: -logKd/Ki=7.37, Ki=43nM
    BindingDB: Ki=43nM, IC50=43nM
    3620 2ax6:A (1.5) BS01 HFT ? N/A P10275 16129672 PDBbind: -logKd/Ki=7.57, Ki=27nM
    BindingDB: IC50=26nM, Ki=43nM
    3621 2ax9:A (1.65) BS01 BHM ? N/A P10275 16129672 MOAD: Ki=0.3nM
    PDBbind: -logKd/Ki=9.52, Ki=0.3nM
    BindingDB: Ki=0.3nM
    3622 2ay1:A (2.2) BS02 AHC 2.6.1.57 GO:0004069 ... P95468 9930977 PDBbind: -logKd/Ki=2.29, Kd=5.14mM
    3623 2ay1:B (2.2) BS02 AHC 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=5.14mM
    PDBbind: -logKd/Ki=2.29, Kd=5.14mM
    3624 2ay2:B (2.4) BS02 CXP 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=13.1mM
    PDBbind: -logKd/Ki=1.88, Kd=13.1mM
    3625 2ay3:A (2.4) BS02 MPP 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=0.28mM
    PDBbind: -logKd/Ki=3.55, Kd=0.28mM
    3626 2ay3:B (2.4) BS01 MPP 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=0.28mM
    PDBbind: -logKd/Ki=3.55, Kd=0.28mM
    3627 2ay3:B (2.4) BS03 MPP 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=0.28mM
    PDBbind: -logKd/Ki=3.55, Kd=0.28mM
    3628 2ay4:B (2.2) BS02 PPT 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=1.24mM
    PDBbind: -logKd/Ki=2.91, Kd=1.24mM
    3629 2ay5:A (2.4) BS02 IOP 2.6.1.57 GO:0004069 ... P95468 9930977 PDBbind: -logKd/Ki=2.59, Kd=2.6mM
    3630 2ay5:B (2.4) BS02 IOP 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=2.6mM
    PDBbind: -logKd/Ki=2.59, Kd=2.6mM
    3631 2ay6:A (2.2) BS02 3IB 2.6.1.57 GO:0004069 ... P95468 9930977 PDBbind: -logKd/Ki=3.11, Kd=0.78mM
    3632 2ay6:B (2.2) BS02 3IB 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=0.78mM
    PDBbind: -logKd/Ki=3.11, Kd=0.78mM
    3633 2ay7:A (2.4) BS02 CLT 2.6.1.57 GO:0004069 ... P95468 9930977 PDBbind: -logKd/Ki=2.30, Kd=5.0mM
    3634 2ay7:B (2.4) BS02 CLT 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=5mM
    PDBbind: -logKd/Ki=2.30, Kd=5.0mM
    3635 2ay8:A (2.2) BS02 4TB 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=5.8mM
    PDBbind: -logKd/Ki=2.24, Kd=5.8mM
    3636 2ay8:A (2.2) BS03 4TB 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=5.8mM
    PDBbind: -logKd/Ki=2.24, Kd=5.8mM
    3637 2ay8:B (2.2) BS01 4TB 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=5.8mM
    PDBbind: -logKd/Ki=2.24, Kd=5.8mM
    3638 2ay8:B (2.2) BS03 4TB 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=5.8mM
    PDBbind: -logKd/Ki=2.24, Kd=5.8mM
    3639 2ay9:A (2.5) BS02 5PV 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=6.9mM
    PDBbind: -logKd/Ki=2.16, Kd=6.9mM
    3640 2ay9:A (2.5) BS03 5PV 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=6.9mM
    PDBbind: -logKd/Ki=2.16, Kd=6.9mM
    3641 2ay9:B (2.5) BS01 5PV 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=6.9mM
    PDBbind: -logKd/Ki=2.16, Kd=6.9mM
    3642 2ay9:B (2.5) BS03 5PV 2.6.1.57 GO:0004069 ... P95468 9930977 MOAD: Kd=6.9mM
    PDBbind: -logKd/Ki=2.16, Kd=6.9mM
    3643 2ayb:A (3.2) BS01 dna ? GO:0003677 ... Q84294 16914454 PDBbind: Kd=2nM
    3644 2ayb:A (3.2) BS02 dna ? GO:0003677 ... Q84294 16914454 PDBbind: Kd=2nM
    3645 2ayb:B (3.2) BS01 dna ? GO:0003677 ... Q84294 16914454 PDBbind: Kd=2nM
    3646 2ayb:B (3.2) BS02 dna ? GO:0003677 ... Q84294 16914454 PDBbind: Kd=2nM
    3647 2ayg:A (3.1) BS01 dna ? GO:0003677 ... Q84294 16914454 PDBbind: Kd=2nM
    3648 2ayg:A (3.1) BS02 dna ? GO:0003677 ... Q84294 16914454 PDBbind: Kd=2nM
    3649 2ayg:B (3.1) BS01 dna ? GO:0003677 ... Q84294 16914454 PDBbind: Kd=2nM
    3650 2ayg:B (3.1) BS02 dna ? GO:0003677 ... Q84294 16914454 PDBbind: Kd=2nM
    3651 2ayp:A (2.9) BS01 43A 2.7.11.1 GO:0000077 ... O14757 16242328 PDBbind: -logKd/Ki=8.15, IC50=7nM
    BindingDB: IC50=7nM
    3652 2ayr:A (1.9) BS01 L4G ? N/A P03372 16250633 MOAD: Ki=0.51nM
    PDBbind: -logKd/Ki=9.29, Ki=0.51nM
    BindingDB: Ki=0.47nM, EC50=10.7nM
    3653 2az0:A (2.6) BS01 rna ? N/A P68831 16228003 PDBbind: Kd=1.4nM
    3654 2az0:A (2.6) BS02 rna ? N/A P68831 16228003 PDBbind: Kd=1.4nM
    3655 2az0:B (2.6) BS01 rna ? N/A P68831 16228003 PDBbind: Kd=1.4nM
    3656 2az0:B (2.6) BS02 rna ? N/A P68831 16228003 PDBbind: Kd=1.4nM
    3657 2az2:A (2.6) BS01 rna ? N/A P68831 16228003 PDBbind: Kd=1.4nM
    3658 2az2:A (2.6) BS02 rna ? N/A P68831 16228003 PDBbind: Kd=1.4nM
    3659 2az2:B (2.6) BS01 rna ? N/A P68831 16228003 PDBbind: Kd=1.4nM
    3660 2az2:B (2.6) BS02 rna ? N/A P68831 16228003 PDBbind: Kd=1.4nM
    3661 2az5:A (2.1) BS01 307 ? GO:0005164 ... P01375 16284179 MOAD: ic50=22uM
    PDBbind: -logKd/Ki=5.27, Kd=5.36uM
    BindingDB: Kd=5360nM, IC50=1300nM
    3662 2az5:B (2.1) BS01 307 ? GO:0005164 ... P01375 16284179 PDBbind: -logKd/Ki=5.27, Kd=5.36uM
    BindingDB: Kd=5360nM, IC50=1300nM
    3663 2az5:D (2.1) BS01 307 ? GO:0005164 ... P01375 16284179 PDBbind: -logKd/Ki=5.27, Kd=5.36uM
    BindingDB: Kd=5360nM, IC50=1300nM
    3664 2az8:A (2.0) BS01 3TL 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 16403521 MOAD: ic50=6nM
    PDBbind: -logKd/Ki=8.22, IC50=6nM
    3665 2az9:A (2.5) BS01 3TL 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 16403521 MOAD: ic50=22nM
    PDBbind: -logKd/Ki=7.66, IC50=22nM
    3666 2azb:A (2.03) BS01 3TL 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 16403521 MOAD: ic50=64nM
    PDBbind: -logKd/Ki=7.19, IC50=64nM
    3667 2azc:A (2.01) BS01 3TL 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 16403521 MOAD: ic50=183nM
    PDBbind: -logKd/Ki=6.74, IC50=183nM
    3668 2azc:A (2.01) BS02 3TL 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 16403521 MOAD: ic50=183nM
    PDBbind: -logKd/Ki=6.74, IC50=183nM
    3669 2azc:B (2.01) BS01 3TL 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 16403521 MOAD: ic50=183nM
    PDBbind: -logKd/Ki=6.74, IC50=183nM
    3670 2azc:B (2.01) BS02 3TL 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 16403521 MOAD: ic50=183nM
    PDBbind: -logKd/Ki=6.74, IC50=183nM
    3671 2azr:A (2.0) BS01 982 3.1.3.48 GO:0004725 ... P18031 16303309 MOAD: Ki=230uM
    PDBbind: -logKd/Ki=3.64, Ki=230uM
    3672 2b07:A (2.1) BS01 598 3.1.3.48 GO:0004725 ... P18031 16303309 MOAD: Ki=0.37uM
    PDBbind: -logKd/Ki=6.43, Ki=0.37uM
    3673 2b0d:A (2.0) BS01 dna 3.1.21.4 GO:0003677 ... P04390 16236314 PDBbind: Kd=900nM
    3674 2b0d:A (2.0) BS02 dna 3.1.21.4 GO:0003677 ... P04390 16236314 PDBbind: Kd=900nM
    3675 2b0d:B (2.0) BS01 dna 3.1.21.4 GO:0003677 ... P04390 16236314 PDBbind: Kd=900nM
    3676 2b0d:B (2.0) BS02 dna 3.1.21.4 GO:0003677 ... P04390 16236314 PDBbind: Kd=900nM
    3677 2b0e:A (1.9) BS01 dna 3.1.21.4 GO:0003677 ... P04390 16236314 PDBbind: Kd=17.5nM
    3678 2b0e:A (1.9) BS02 dna 3.1.21.4 GO:0003677 ... P04390 16236314 PDBbind: Kd=17.5nM
    3679 2b0e:B (1.9) BS01 dna 3.1.21.4 GO:0003677 ... P04390 16236314 PDBbind: Kd=17.5nM
    3680 2b0e:B (1.9) BS02 dna 3.1.21.4 GO:0003677 ... P04390 16236314 PDBbind: Kd=17.5nM
    3681 2b17:A (2.71) BS01 DIF 3.1.1.4 GO:0004623 ... P59071 16552142 PDBbind: -logKd/Ki=6.21, Ki=0.62uM
    3682 2b1g:A (2.1) BS01 13A 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 17324932 MOAD: Ki=0.23uM
    PDBbind: -logKd/Ki=6.64, Ki=0.23uM
    3683 2b1i:A (2.02) BS01 93A 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 17324932 MOAD: Ki=0.15uM
    PDBbind: -logKd/Ki=6.82, Ki=0.15uM
    3684 2b1i:A (2.02) BS02 93A 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 17324932 MOAD: Ki=0.15uM
    PDBbind: -logKd/Ki=6.82, Ki=0.15uM
    3685 2b1i:A (2.02) BS03 93A 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 17324932 MOAD: Ki=0.15uM
    PDBbind: -logKd/Ki=6.82, Ki=0.15uM
    3686 2b1i:B (2.02) BS01 93A 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 17324932 MOAD: Ki=0.15uM
    PDBbind: -logKd/Ki=6.82, Ki=0.15uM
    3687 2b1i:B (2.02) BS02 93A 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 17324932 MOAD: Ki=0.15uM
    PDBbind: -logKd/Ki=6.82, Ki=0.15uM
    3688 2b1i:B (2.02) BS03 93A 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 17324932 MOAD: Ki=0.15uM
    PDBbind: -logKd/Ki=6.82, Ki=0.15uM
    3689 2b1p:A (1.9) BS01 AIZ 2.7.11.24 GO:0004672 ... P53779 16140012 MOAD: ic50=3nM
    PDBbind: -logKd/Ki=8.52, IC50=3nM
    BindingDB: IC50=3nM
    3690 2b1v:A (1.8) BS02 458 ? N/A P03372 16648639 MOAD: Ki=1.8uM
    PDBbind: -logKd/Ki=5.74, Ki=1.8uM
    3691 2b1z:A (1.78) BS02 17M ? N/A P03372 17949766 MOAD: ic50=79nM
    PDBbind: -logKd/Ki=7.10, IC50=79nM
    3692 2b4m:A (2.8) BS01 PBE ? GO:0005886 ... P46922 16445940 PDBbind: -logKd/Ki=3.53, Kd=295uM
    3693 2b52:A (1.88) BS01 D42 2.7.11.22 GO:0000082 ... P24941 14698155 MOAD: ic50=8nM
    PDBbind: -logKd/Ki=8.10, IC50=8nM
    BindingDB: IC50=8nM
    3694 2b53:A (2.0) BS01 D23 2.7.11.22 GO:0000082 ... P24941 11354366 MOAD: ic50=0.6uM
    PDBbind: -logKd/Ki=6.22, IC50=0.6uM
    BindingDB: IC50=600nM
    3695 2b54:A (1.85) BS01 D05 2.7.11.22 GO:0000082 ... P24941 15537345 PDBbind: -logKd/Ki=7.70, IC50=0.020uM
    BindingDB: IC50=20nM
    3696 2b55:A (1.85) BS01 D31 2.7.11.22 GO:0000082 ... P24941 12431051 MOAD: ic50=96nM
    PDBbind: -logKd/Ki=7.02, IC50=96nM
    BindingDB: IC50=96nM
    3697 2b5j:A (2.9) BS02 3AC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 16302798 PDBbind: -logKd/Ki=9.10, IC50=0.8nM
    3698 2b63:A (3.8) BS01 rna 2.7.7.6 GO:0000428 ... P04050 16341226 PDBbind: Kd=33nM
    3699 2b63:B (3.8) BS01 rna 2.7.7.6 GO:0000428 ... P08518 16341226 PDBbind: Kd=33nM
    3700 2b6g:A (-1.00) BS01 rna ? GO:0003729 ... Q08831 16429155 PDBbind: Kd=30nM
    3701 2b7a:A (2.0) BS01 IZA 2.7.10.2 GO:0004672 ... O60674 16174768 MOAD: ic50=1nM
    PDBbind: -logKd/Ki=9.00, IC50=1nM
    BindingDB: IC50=1nM
    3702 2b7d:H (2.24) BS01 C1B 3.4.21.21 GO:0004252 ... P08709 16412633 MOAD: Ki=0.002uM
    PDBbind: -logKd/Ki=8.70, Ki=2nM
    BindingDB: Ki=2nM
    3703 2b8l:A (1.7) BS01 5HA 3.4.23.46 GO:0004190 ... P56817 16263281 MOAD: ic50=15nM
    PDBbind: -logKd/Ki=7.82, IC50=15nM
    BindingDB: IC50=15nM, EC50=43nM, Ki=233nM
    3704 2b8v:A (1.8) BS01 3BN 3.4.23.46 GO:0004190 ... P56817 16263281 MOAD: ic50=98nM
    PDBbind: -logKd/Ki=7.01, IC50=98nM
    BindingDB: IC50=98nM
    3705 2b9a:A (1.54) BS01 FBC ? GO:0005179 ... P02766 14711308 PDBbind: -logKd/Ki=8.05, Kd=9nM
    3706 2b9a:B (1.54) BS01 FBC ? GO:0005179 ... P02766 14711308 PDBbind: -logKd/Ki=8.05, Kd=9nM
    3707 2baj:A (2.25) BS01 1PP 2.7.11.24 GO:0000077 ... Q16539 16342939 MOAD: Kd=4nM
    PDBbind: -logKd/Ki=8.40, Kd=4.0nM
    BindingDB: IC50=30nM
    3708 2bak:A (2.2) BS01 AQZ 2.7.11.24 GO:0000077 ... Q16539 16342939 MOAD: Kd=37nM
    PDBbind: -logKd/Ki=7.43, Kd=37nM
    BindingDB: IC50=39nM
    3709 2bal:A (2.1) BS01 PQA 2.7.11.24 GO:0000077 ... Q16539 16342939 MOAD: Kd=490nM
    PDBbind: -logKd/Ki=6.31, Kd=490nM
    3710 2ban:A (2.95) BS02 357 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 16302798 PDBbind: -logKd/Ki=9.00, IC50=1nM
    3711 2bb7:A (1.7) BS03 QMS 3.4.11.18 GO:0004177 ... P0AE18 16300729 MOAD: ic50=2.14uM
    PDBbind: -logKd/Ki=5.67, IC50=2.14uM
    3712 2bbb:A (1.7) BS01 HH1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 16298527 MOAD: ic50=2.4nM
    PDBbind: -logKd/Ki=8.62, IC50=2.4nM
    3713 2bbb:B (1.7) BS01 HH1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 16298527 PDBbind: -logKd/Ki=8.62, IC50=2.4nM
    3714 2bdf:A (2.1) BS01 24A 2.7.10.2 GO:0004672 ... P12931 16492148 MOAD: ic50=0.067uM
    PDBbind: -logKd/Ki=7.17, IC50=0.067uM
    3715 2bdj:A (2.5) BS01 HET 2.7.10.2 GO:0004672 ... P12931 16492148 MOAD: ic50=0.00045uM
    PDBbind: -logKd/Ki=9.35, IC50=0.45nM
    BindingDB: IC50=0.450000nM
    3716 2bdl:A (2.0) BS01 4PR 3.4.22.38 GO:0006508 ... P43235 16376075 PDBbind: -logKd/Ki=7.82, IC50=15nM
    3717 2bdy:A (1.61) BS02 UNB 3.4.21.5 GO:0004252 ... P00734 16290930 MOAD: ic50=0.017uM
    PDBbind: -logKd/Ki=7.77, IC50=17nM
    BindingDB: IC50=17nM
    3718 2be2:A (2.43) BS03 R22 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 16302798 MOAD: ic50=0.002uM
    PDBbind: -logKd/Ki=8.70, IC50=2nM
    3719 2bed:A (2.7) BS01 736 2.5.1.58
    2.5.1.59    		 GO:0008318 ... Q04631 16298128 PDBbind: -logKd/Ki=8.15, IC50=0.007uM
    3720 2bed:B (2.7) BS03 736 2.5.1.58 GO:0003824 ... Q02293 16298128 PDBbind: -logKd/Ki=8.15, IC50=0.007uM
    3721 2bes:A (2.1) BS01 RES 5.3.1.6 GO:0004751 ... P9WKD7 15590681 MOAD: Ki=0.057mM
    PDBbind: -logKd/Ki=4.24, Ki=57uM
    BindingDB: Ki=57000nM
    3722 2bes:A (2.1) BS02 RES 5.3.1.6 GO:0004751 ... P9WKD7 15590681 MOAD: Ki=0.057mM
    PDBbind: -logKd/Ki=4.24, Ki=57uM
    BindingDB: Ki=57000nM
    3723 2bes:B (2.1) BS01 RES 5.3.1.6 GO:0004751 ... P9WKD7 15590681 MOAD: Ki=0.057mM
    PDBbind: -logKd/Ki=4.24, Ki=57uM
    BindingDB: Ki=57000nM
    3724 2bes:B (2.1) BS02 RES 5.3.1.6 GO:0004751 ... P9WKD7 15590681 MOAD: Ki=0.057mM
    PDBbind: -logKd/Ki=4.24, Ki=57uM
    BindingDB: Ki=57000nM
    3725 2bet:A (2.2) BS01 DEZ 5.3.1.6 GO:0004751 ... P9WKD7 15590681 MOAD: Ki=1.7mM
    PDBbind: -logKd/Ki=2.77, Ki=1.7mM
    3726 2bet:A (2.2) BS02 DEZ 5.3.1.6 GO:0004751 ... P9WKD7 15590681 MOAD: Ki=1.7mM
    PDBbind: -logKd/Ki=2.77, Ki=1.7mM
    3727 2bet:B (2.2) BS01 DEZ 5.3.1.6 GO:0004751 ... P9WKD7 15590681 MOAD: Ki=1.7mM
    PDBbind: -logKd/Ki=2.77, Ki=1.7mM
    3728 2bet:B (2.2) BS02 DEZ 5.3.1.6 GO:0004751 ... P9WKD7 15590681 MOAD: Ki=1.7mM
    PDBbind: -logKd/Ki=2.77, Ki=1.7mM
    3729 2bfq:A (1.5) BS01 AR6 3.2.2.- GO:0016787 ... O28751 15902274 PDBbind: -logKd/Ki=6.89, Kd=0.13uM
    3730 2bfr:A (2.5) BS01 ADP 3.2.2.- GO:0016787 ... O28751 15902274 MOAD: Kd=5.63uM
    PDBbind: -logKd/Ki=5.25, Kd=5.63uM
    3731 2bgd:A (2.4) BS01 T1D 3.1.3.48 GO:0004725 ... P18031 15863305 MOAD: ic50=2.47uM
    PDBbind: -logKd/Ki=5.00, Kd<10uM
    BindingDB: IC50=2500nM
    3732 2bge:A (1.8) BS01 T2D 3.1.3.48 GO:0004725 ... P18031 15863305 MOAD: ic50=1608uM
    PDBbind: -logKd/Ki=2.80, IC50=1.6mM
    BindingDB: IC50=1600000nM
    3733 2bjc:A (-1.00) BS01 dna ? GO:0003677 ... P03023 16094693 PDBbind: Kd=0.01nM
    3734 2bjc:A (-1.00) BS02 dna ? GO:0003677 ... P03023 16094693 PDBbind: Kd=0.01nM
    3735 2bjc:B (-1.00) BS01 dna ? GO:0003677 ... P03023 16094693 PDBbind: Kd=0.01nM
    3736 2bjc:B (-1.00) BS02 dna ? GO:0003677 ... P03023 16094693 PDBbind: Kd=0.01nM
    3737 2bjm:H (2.15) BS01 ANF N/A N/A N/A 16129832 MOAD: Ka<100000M^-1
    PDBbind: -logKd/Ki=3.70, Kd=200uM
    3738 2bjm:L (2.15) BS01 ANF ? GO:0002250 ... P01724 16129832 PDBbind: -logKd/Ki=3.70, Kd=200uM
    3739 2bks:B (2.2) BS01 PZ1 3.4.23.15 GO:0004190 ... P00797 15837327 PDBbind: -logKd/Ki=7.43, IC50=37nM
    BindingDB: IC50=37nM
    3740 2bkt:A (2.3) BS01 RPF 3.4.23.15 GO:0004190 ... P00797 15837327 MOAD: ic50=23nM
    PDBbind: -logKd/Ki=7.64, IC50=23nM
    BindingDB: IC50=23nM
    3741 2bkz:A (2.6) BS01 SBC 2.7.11.22 GO:0000082 ... P24941 15713378 PDBbind: -logKd/Ki=8.15, IC50=7nM
    BindingDB: IC50=0.3nM
    3742 2bmc:A (2.6) BS01 MPY 2.7.11.1 GO:0000212 ... O14965 15828847 PDBbind: -logKd/Ki=7.57, IC50=27nM
    3743 2bmg:B (2.7) BS02 I1H 3.4.21.6 GO:0004252 ... P00742 15857135 PDBbind: -logKd/Ki=7.74, Ki=18nM
    BindingDB: Ki=18nM
    3744 2bmk:A (2.3) BS01 PDD N/A N/A N/A 16790434 PDBbind: -logKd/Ki=5.62, Kd=2.4uM
    3745 2bmk:B (2.3) BS01 PDD N/A N/A N/A 16790434 MOAD: Kd=2.4uM
    PDBbind: -logKd/Ki=5.62, Kd=2.4uM
    3746 2bnw:A (2.45) BS01 dna ? GO:0006355 ... Q57468 16528102 PDBbind: Kd=20nM
    3747 2bnw:A (2.45) BS02 dna ? GO:0006355 ... Q57468 16528102 PDBbind: Kd=20nM
    3748 2bnw:B (2.45) BS01 dna ? GO:0006355 ... Q57468 16528102 PDBbind: Kd=20nM
    3749 2bnw:B (2.45) BS02 dna ? GO:0006355 ... Q57468 16528102 PDBbind: Kd=20nM
    3750 2bnw:C (2.45) BS01 dna ? GO:0006355 ... Q57468 16528102 PDBbind: Kd=20nM
    3751 2bnw:C (2.45) BS02 dna ? GO:0006355 ... Q57468 16528102 PDBbind: Kd=20nM
    3752 2bnw:D (2.45) BS01 dna ? GO:0006355 ... Q57468 16528102 PDBbind: Kd=20nM
    3753 2bnw:D (2.45) BS02 dna ? GO:0006355 ... Q57468 16528102 PDBbind: Kd=20nM
    3754 2bnz:A (2.6) BS01 dna ? GO:0006355 ... Q57468 16528102 PDBbind: Kd=20nM
    3755 2bnz:A (2.6) BS02 dna ? GO:0006355 ... Q57468 16528102 PDBbind: Kd=20nM
    3756 2bnz:B (2.6) BS01 dna ? GO:0006355 ... Q57468 16528102 PDBbind: Kd=20nM
    3757 2bnz:B (2.6) BS02 dna ? GO:0006355 ... Q57468 16528102 PDBbind: Kd=20nM
    3758 2bnz:C (2.6) BS01 dna ? GO:0006355 ... Q57468 16528102 PDBbind: Kd=20nM
    3759 2bnz:C (2.6) BS02 dna ? GO:0006355 ... Q57468 16528102 PDBbind: Kd=20nM
    3760 2bnz:D (2.6) BS01 dna ? GO:0006355 ... Q57468 16528102 PDBbind: Kd=20nM
    3761 2bnz:D (2.6) BS02 dna ? GO:0006355 ... Q57468 16528102 PDBbind: Kd=20nM
    3762 2boh:B (2.2) BS02 IIA 3.4.21.6 GO:0004252 ... P00742 15999990 MOAD: Ki=3nM
    PDBbind: -logKd/Ki=8.52, Ki=3nM
    BindingDB: Ki=3nM
    3763 2boi:A (1.1) BS03 MFU ? GO:0046872 ... Q7NX84 16768446 MOAD: ic50=48uM
    PDBbind: -logKd/Ki=4.32, IC50=48uM
    3764 2boi:B (1.1) BS03 MFU ? GO:0046872 ... Q7NX84 16768446 MOAD: ic50=48uM
    PDBbind: -logKd/Ki=4.32, IC50=48uM
    3765 2boj:A (1.8) BS01 ARW ? GO:0030246 ... Q9HYN5 16438968 MOAD: Kd=1.7uM
    PDBbind: -logKd/Ki=5.77, Kd=1.7uM
    3766 2boj:C (1.8) BS01 ARW ? GO:0030246 ... Q9HYN5 16438968 MOAD: Kd=1.7uM
    PDBbind: -logKd/Ki=5.77, Kd=1.7uM
    3767 2bok:A (1.64) BS01 784 3.4.21.6 GO:0004252 ... P00742 15952226 MOAD: Ki=0.28uM
    PDBbind: -logKd/Ki=6.55, Ki=0.28uM
    3768 2bow:A (2.8) BS02 P4P ? N/A P39075 10025401 PDBbind: -logKd/Ki=4.00, Kd=100uM
    3769 2bpm:A (2.4) BS01 529 2.7.11.22 GO:0000082 ... P24941 15828833 MOAD: ic50=2nM
    PDBbind: -logKd/Ki=8.70, IC50=2nM
    3770 2bpv:A (1.9) BS01 1IN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 9757136 PDBbind: -logKd/Ki=7.67, Ki=21.2nM
    3771 2bpv:B (1.9) BS01 1IN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 9757136 MOAD: Ki=21.2nM
    PDBbind: -logKd/Ki=7.67, Ki=21.2nM
    3772 2bpx:A (2.8) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 9757136 PDBbind: -logKd/Ki=9.40, Ki=0.4nM
    3773 2bpx:B (2.8) BS01 MK1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 9757136 PDBbind: -logKd/Ki=9.40, Ki=0.4nM
    3774 2bpy:A (1.9) BS01 3IN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 9757136 PDBbind: -logKd/Ki=7.40, Ki=39.8nM
    3775 2bpy:B (1.9) BS01 3IN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P04587 9757136 MOAD: Ki=39.8nM
    PDBbind: -logKd/Ki=7.40, Ki=39.8nM
    3776 2bq6:B (3.0) BS02 IIB 3.4.21.6 GO:0004252 ... P00742 15999990 PDBbind: -logKd/Ki=10.15, Ki=0.07nM
    BindingDB: Ki=0.07nM
    3777 2bq7:B (2.2) BS01 IID 3.4.21.6 GO:0004252 ... P00742 15999990 PDBbind: -logKd/Ki=7.05, Ki=89nM
    BindingDB: Ki=89nM
    3778 2bqv:A (2.1) BS01 A1A 3.4.23.16 GO:0004190 ... O92139 16335934 MOAD: Ki=9nM
    PDBbind: -logKd/Ki=8.05, Ki=9nM
    3779 2bqv:B (2.1) BS01 A1A 3.4.23.16 GO:0004190 ... O92139 16335934 PDBbind: -logKd/Ki=8.05, Ki=9nM
    3780 2bqw:B (2.95) BS02 IIE 3.4.21.6 GO:0004252 ... P00742 15999990 PDBbind: -logKd/Ki=8.52, Ki=3nM
    BindingDB: Ki=3nM
    3781 2br1:A (2.0) BS01 PFP 2.7.11.1 GO:0000077 ... O14757 15974586 MOAD: Ki=7.2uM
    PDBbind: -logKd/Ki=5.14, Ki=7.2uM
    BindingDB: IC50=15400nM
    3782 2br6:A (1.7) BS03 HSL 3.1.1.81 GO:0016787 ... P0CJ63 16314577 MOAD: Ki=1.1mM
    PDBbind: -logKd/Ki=2.96, Ki=1.10mM
    3783 2brb:A (2.1) BS01 PFQ 2.7.11.1 GO:0000077 ... O14757 15974586 MOAD: Ki=13.7uM
    PDBbind: -logKd/Ki=4.86, Ki=13.7uM
    BindingDB: IC50=20900nM
    3784 2brc:A (1.6) BS01 CT5 ? GO:0005524 ... P02829 15955698 MOAD: ic50=7.1uM
    PDBbind: -logKd/Ki=5.05, IC50=8.9uM
    3785 2brg:A (2.1) BS01 DFY 2.7.11.1 GO:0000077 ... O14757 15974586 MOAD: ic50=6.1uM
    PDBbind: -logKd/Ki=5.21, IC50=6.1uM
    BindingDB: IC50=6100nM
    3786 2brh:A (2.1) BS01 DFW 2.7.11.1 GO:0000077 ... O14757 15974586 MOAD: ic50=22.9uM
    PDBbind: -logKd/Ki=4.64, IC50=22.9uM
    BindingDB: IC50=22900nM
    3787 2brm:A (2.2) BS01 DFZ 2.7.11.1 GO:0000077 ... O14757 15974586 MOAD: Ki=1.3uM
    PDBbind: -logKd/Ki=5.89, Ki=1.3uM
    BindingDB: IC50=2300nM
    3788 2brn:A (2.8) BS01 DF1 2.7.11.1 GO:0000077 ... O14757 15974586 PDBbind: -logKd/Ki=5.26, IC50=5.5uM
    BindingDB: IC50=5500nM
    3789 2bro:A (2.2) BS01 DF2 2.7.11.1 GO:0000077 ... O14757 15974586 MOAD: ic50=1.4uM
    PDBbind: -logKd/Ki=5.85, IC50=1.4uM
    BindingDB: IC50=1400nM
    3790 2brp:A (2.0) BS01 SIE 4.2.2.1 GO:0003824 ... Q54873 16638841 MOAD: ic50>100uM
    PDBbind: -logKd/Ki=4.00, IC50=100uM
    3791 2bsq:A (3.0) BS01 dna 3.1.-.- GO:0000287 ... Q5F882 16982615 PDBbind: Kd=4.5nM
    3792 2bsq:E (3.0) BS01 dna ? GO:0003677 ... Q5F881 16982615 PDBbind: Kd=4.5nM
    3793 2bsq:E (3.0) BS02 dna ? GO:0003677 ... Q5F881 16982615 PDBbind: Kd=4.5nM
    3794 2bsq:F (3.0) BS01 dna ? GO:0003677 ... Q5F881 16982615 PDBbind: Kd=4.5nM
    3795 2bsq:F (3.0) BS02 dna ? GO:0003677 ... Q5F881 16982615 PDBbind: Kd=4.5nM
    3796 2bsq:G (3.0) BS01 dna ? GO:0003677 ... Q5F881 16982615 PDBbind: Kd=4.5nM
    3797 2bsq:G (3.0) BS02 dna ? GO:0003677 ... Q5F881 16982615 PDBbind: Kd=4.5nM
    3798 2bsq:H (3.0) BS01 dna ? GO:0003677 ... Q5F881 16982615 PDBbind: Kd=4.5nM
    3799 2bt9:A (0.94) BS01 MFU ? N/A Q8XXK6 15923179 MOAD: Kd=0.64uM
    PDBbind: -logKd/Ki=6.19, Kd=0.64uM
    3800 2bt9:A (0.94) BS02 MFU ? N/A Q8XXK6 15923179 MOAD: Kd=0.64uM
    PDBbind: -logKd/Ki=6.19, Kd=0.64uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218