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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3201 1xuo:A (1.8) BS02 LA1 ? N/A P20701 15686945 MOAD: ic50=69nM
    PDBbind: -logKd/Ki=7.16, IC50=69nM
    BindingDB: IC50=69nM
    3202 1xur:A (1.85) BS05 PB5 3.4.24.- GO:0004222 ... P45452 15734640 MOAD: ic50=6600nM
    PDBbind: -logKd/Ki=5.18, IC50=6600nM
    BindingDB: IC50=6600nM
    3203 1xws:A (1.8) BS01 BI1 2.7.11.1 GO:0004672 ... P11309 N/A PDBbind: -logKd/Ki=8.00, Kd=10nM
    BindingDB: IC50=150nM, Kd=10.0nM
    3204 1xxe:A (-1.00) BS02 TUX 3.5.1.108 GO:0006796 ... O67648 15667205 PDBbind: -logKd/Ki=5.41, Ki=3.9uM
    3205 1xxh:D (3.45) BS02 AGS 2.7.7.7 GO:0003677 ... P06710 15556993 PDBbind: -logKd/Ki=6.11, Kd=0.78uM
    3206 1xxi:D (4.1) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 15556993 PDBbind: -logKd/Ki=5.52, Kd=3.0uM
    3207 1xz8:B (2.8) BS02 U5P 2.4.2.9 GO:0003723 ... P41007 15716449 PDBbind: -logKd/Ki=4.52, Kd=30uM
    3208 1xzx:X (2.5) BS01 T3 ? GO:0003677 ... P10828 15466465 MOAD: Kd=0.06nM
    PDBbind: -logKd/Ki=10.22, Kd=0.06nM
    3209 1y0l:H (2.5) BS01 HAN N/A N/A N/A 15788533 MOAD: Kd~1nM
    PDBbind: -logKd/Ki=9.00, Kd=1nM
    3210 1y0l:L (2.5) BS01 HAN N/A N/A N/A 15788533 PDBbind: -logKd/Ki=9.00, Kd=1nM
    3211 1y0x:X (3.1) BS01 T44 ? GO:0003677 ... P10828 15466465 PDBbind: -logKd/Ki=8.70, Kd=2nM
    BindingDB: EC50=240nM
    3212 1y1m:A (1.8) BS01 AC5 ? GO:0015276 ... P35439 15996549 MOAD: Ki=15.3mM
    PDBbind: -logKd/Ki=1.82, Ki=15.3mM
    3213 1y1z:A (1.5) BS01 192 ? GO:0015276 ... P35439 15996549 MOAD: Ki=0.831mM
    PDBbind: -logKd/Ki=3.08, Ki=0.831mM
    3214 1y20:A (1.4) BS01 1AC ? GO:0015276 ... P35439 15996549 MOAD: Ki=4.8uM
    PDBbind: -logKd/Ki=5.32, Ki=4.8uM
    3215 1y2b:A (1.4) BS02 DEE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=82uM
    PDBbind: -logKd/Ki=4.09, IC50=82uM
    BindingDB: IC50=82000nM
    3216 1y2c:A (1.67) BS02 3DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=0.27uM
    PDBbind: -logKd/Ki=6.57, IC50=0.27uM
    3217 1y2d:A (1.7) BS02 4DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=2uM
    PDBbind: -logKd/Ki=5.70, IC50=2.0uM
    BindingDB: IC50=2000nM
    3218 1y2e:A (2.1) BS02 5DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=0.16uM
    PDBbind: -logKd/Ki=6.80, IC50=0.16uM
    BindingDB: IC50=160nM
    3219 1y2f:A (2.0) BS01 WAI ? GO:0016020 ... P77173 15743191 MOAD: Kd=12uM
    PDBbind: -logKd/Ki=4.92, Kd=12uM
    BindingDB: Ki=12000nM, Kd=12000nM
    3220 1y2g:A (1.9) BS01 CL3 ? GO:0016020 ... P77173 15743191 MOAD: Kd=83.1uM
    PDBbind: -logKd/Ki=4.08, Kd=83.1uM
    BindingDB: Kd=83100nM
    3221 1y2h:A (2.4) BS02 6DE 3.1.4.53 GO:0004114 ... Q07343 15685167 MOAD: ic50=0.056uM
    PDBbind: -logKd/Ki=7.25, IC50=0.056uM
    BindingDB: IC50=56nM
    3222 1y2j:A (2.55) BS02 7DE 3.1.4.53 GO:0004114 ... Q07343 15685167 PDBbind: -logKd/Ki=7.48, IC50=0.033uM
    BindingDB: IC50=33nM
    3223 1y2k:A (1.36) BS02 7DE 3.1.4.53 GO:0004114 ... Q08499 15685167 MOAD: ic50=0.021uM
    PDBbind: -logKd/Ki=7.68, IC50=0.021uM
    BindingDB: IC50=21nM
    3224 1y3g:E (2.1) BS06 AMM 3.4.24.27 GO:0004222 ... P00800 16342943 PDBbind: -logKd/Ki=7.40, Ki=40nM
    3225 1y3g:E (2.1) BS07 LEU 3.4.24.27 GO:0004222 ... P00800 16342943 PDBbind: -logKd/Ki=7.40, Ki=40nM
    3226 1y3n:A (1.6) BS01 MAV ? GO:0046872 ... Q9KWT6 15794643 PDBbind: -logKd/Ki=5.55, Kd=2.8uM
    3227 1y3n:A (1.6) BS02 BEM ? GO:0046872 ... Q9KWT6 15794643 PDBbind: -logKd/Ki=5.55, Kd=2.8uM
    3228 1y3p:A (2.0) BS01 MAV ? GO:0046872 ... Q9KWT6 15794643 PDBbind: -logKd/Ki=4.82, Kd=15uM
    3229 1y3p:A (2.0) BS02 MAV ? GO:0046872 ... Q9KWT6 15794643 PDBbind: -logKd/Ki=4.82, Kd=15uM
    3230 1y3p:A (2.0) BS03 BEM ? GO:0046872 ... Q9KWT6 15794643 PDBbind: -logKd/Ki=4.82, Kd=15uM
    3231 1y3v:A (1.6) BS02 UIR 3.4.21.4 GO:0004175 ... P00760 16374786 MOAD: Ki=2300nM
    PDBbind: -logKd/Ki=5.64, Ki=2300nM
    3232 1y3w:A (1.8) BS02 UIP 3.4.21.4 GO:0004175 ... P00760 16374786 MOAD: Ki=1680nM
    PDBbind: -logKd/Ki=5.77, Ki=1680nM
    3233 1y3x:A (1.7) BS02 UIB 3.4.21.4 GO:0004175 ... P00760 16374786 MOAD: Ki=7315nM
    PDBbind: -logKd/Ki=5.14, Ki=7315nM
    3234 1y3y:A (1.75) BS02 UIR 3.4.21.4 GO:0004175 ... P00760 16374786 MOAD: Ki=2300nM
    PDBbind: -logKd/Ki=5.64, Ki=2300nM
    3235 1y4z:C (2.0) BS03 PCI 1.7.5.1 GO:0005886 ... P11350 15615728 MOAD: Ki=57nM
    PDBbind: -logKd/Ki=7.24, Ki=57nM
    3236 1y57:A (1.91) BS01 MPZ 2.7.10.2 GO:0004672 ... P12931 15939018 MOAD: ic50=1633nM
    PDBbind: -logKd/Ki=5.79, IC50=1633nM
    BindingDB: IC50=7800nM
    3237 1y69:8 (3.33) BS01 rna ? GO:0006412 ... P0A805 15616575 PDBbind: Kd=0.52uM
    3238 1y69:K (3.33) BS01 rna ? GO:0000049 ... Q9RXJ5 15616575 PDBbind: Kd=0.52uM
    3239 1y69:K (3.33) BS02 rna ? GO:0000049 ... Q9RXJ5 15616575 PDBbind: Kd=0.52uM
    3240 1y69:U (3.33) BS01 rna ? GO:0000049 ... Q9RY65 15616575 PDBbind: Kd=0.52uM
    3241 1y6a:A (2.1) BS01 AAZ 2.7.10.1 GO:0004672 ... P35968 15743202 MOAD: ic50=0.022uM
    PDBbind: -logKd/Ki=7.66, IC50=22nM
    BindingDB: IC50=22nM
    3242 1y6b:A (2.1) BS01 AAX 2.7.10.1 GO:0004672 ... P35968 15743202 MOAD: ic50=38nM
    PDBbind: -logKd/Ki=7.42, IC50=38nM
    BindingDB: IC50=38nM
    3243 1y6q:A (2.2) BS01 TDI 3.2.2.9 GO:0003824 ... P0AF12 15746096 MOAD: Ki=2pM
    PDBbind: -logKd/Ki=11.70, Ki=2pM
    BindingDB: Kd=0.002nM, Ki=0.048nM
    3244 1y6q:B (2.2) BS01 TDI 3.2.2.9 GO:0003824 ... P0AF12 15746096 MOAD: Ki=2pM
    PDBbind: -logKd/Ki=11.70, Ki=2pM
    BindingDB: Kd=0.002nM, Ki=0.048nM
    3245 1y6r:A (2.2) BS01 MTM 3.2.2.9 GO:0003824 ... P0AF12 15746096 MOAD: Ki=77pM
    PDBbind: -logKd/Ki=10.11, Ki=77pM
    3246 1y6r:B (2.2) BS01 MTM 3.2.2.9 GO:0003824 ... P0AF12 15746096 MOAD: Ki=77pM
    PDBbind: -logKd/Ki=10.11, Ki=77pM
    3247 1y8o:A (2.48) BS01 ADP 2.7.11.2 GO:0004672 ... Q15120 15861126 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.30uM
    3248 1y8p:A (2.63) BS01 ATP 2.7.11.2 GO:0004672 ... Q15120 15861126 PDBbind: -logKd/Ki=6.08, Kd=0.84uM
    3249 1y91:A (2.15) BS01 CT9 2.7.11.22 GO:0000082 ... P24941 15686876 MOAD: ic50=0.059uM
    PDBbind: -logKd/Ki=7.23, IC50=0.059uM
    BindingDB: IC50=59nM
    3250 1ya4:A (3.2) BS02 CTX 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098 PDBbind: -logKd/Ki=4.82, Ki=15.2uM
    3251 1ya4:A (3.2) BS03 CTX 3.1.1.1
    3.1.1.13
    3.1.1.56    		 GO:0004771 ... P23141 16081098 PDBbind: -logKd/Ki=4.82, Ki=15.2uM
    3252 1ybg:A (2.6) BS01 TAV 2.5.1.7 GO:0003824 ... P33038 15701635 PDBbind: -logKd/Ki=4.80, Ki=16uM
    3253 1ybg:D (2.6) BS01 TAV 2.5.1.7 GO:0003824 ... P33038 15701635 PDBbind: -logKd/Ki=4.80, Ki=16uM
    3254 1yc1:A (1.7) BS01 4BC 3.6.4.10 GO:0005524 ... P07900 15713410 MOAD: Kd=0.68uM
    PDBbind: -logKd/Ki=6.17, Kd=680nM
    BindingDB: Kd=680nM
    3255 1yc4:A (1.81) BS01 43P 3.6.4.10 GO:0005524 ... P07900 15713410 MOAD: Kd=0.28uM
    PDBbind: -logKd/Ki=6.55, Kd=280nM
    BindingDB: Kd=280nM
    3256 1yc5:A (1.4) BS03 NCA 2.3.1.286 GO:0005737 ... Q9WYW0 15780941 MOAD: ic50=1mM
    PDBbind: -logKd/Ki=3.00, IC50=1.0mM
    3257 1yci:A (2.7) BS02 NDF 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 15913349 PDBbind: -logKd/Ki=4.08, Ki=83uM
    BindingDB: Kd=83000nM
    3258 1yci:A (2.7) BS03 NDF 1.14.11.30
    1.14.11.n4    		 GO:0003714 ... Q9NWT6 15913349 PDBbind: -logKd/Ki=4.08, Ki=83uM
    BindingDB: Kd=83000nM
    3259 1ycm:A (-1.00) BS06 NGH 3.4.24.65 GO:0004222 ... P39900 15809432 PDBbind: -logKd/Ki=8.00, Kd=10nM
    BindingDB: Ki=4.3nM
    3260 1yda:A (2.1) BS02 AZM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7696263 MOAD: Kd=280nM
    PDBbind: -logKd/Ki=6.55, Kd=280nM
    BindingDB: Ki=12nM, Kd=17nM, IC50=10nM
    3261 1ydb:A (1.9) BS02 AZM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7696263 MOAD: Kd=5.8nM
    PDBbind: -logKd/Ki=8.24, Kd=5.8nM
    BindingDB: Ki=12nM, Kd=17nM, IC50=10nM
    3262 1ydd:A (2.1) BS02 AZM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7696263 MOAD: Kd=86nM
    PDBbind: -logKd/Ki=7.07, Kd=86nM
    BindingDB: Ki=12nM, Kd=17nM, IC50=10nM
    3263 1ydk:A (1.95) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 15893769 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    3264 1ydk:A (1.95) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 15893769 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    3265 1ydk:B (1.95) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 15893769 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    3266 1ydk:B (1.95) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-    		 GO:0004364 ... P08263 15893769 MOAD: Kd=1.3uM
    PDBbind: -logKd/Ki=5.89, Kd=1.3uM
    3267 1ydr:E (2.2) BS02 IQP 2.7.11.11 GO:0001669 ... P00517 8824261 MOAD: Ki=3uM
    PDBbind: -logKd/Ki=5.52, Ki=3.0uM
    3268 1yds:E (2.2) BS02 IQS 2.7.11.11 GO:0001669 ... P00517 8824261 MOAD: Ki=1.2uM
    PDBbind: -logKd/Ki=5.92, Ki=1.2uM
    BindingDB: IC50=5300nM
    3269 1ydt:E (2.3) BS02 IQB 2.7.11.11 GO:0001669 ... P00517 8824261 MOAD: Ki=48nM
    PDBbind: -logKd/Ki=7.32, Ki=48nM
    BindingDB: IC50=73nM
    3270 1yei:H (1.9) BS01 PGG N/A N/A N/A 9826512 PDBbind: -logKd/Ki=7.46, Kd=35nM
    3271 1yei:L (1.9) BS02 PGG ? GO:0046872 ... Q58EU8 9826512 MOAD: Kd=35nM
    PDBbind: -logKd/Ki=7.46, Kd=35nM
    3272 1yej:H (1.85) BS01 PNF N/A N/A N/A 9826512 PDBbind: -logKd/Ki=7.46, Kd=35nM
    3273 1yej:L (1.85) BS03 PNF ? GO:0046872 ... Q58EU8 9826512 MOAD: Kd=35nM
    PDBbind: -logKd/Ki=7.46, Kd=35nM
    3274 1yet:A (1.9) BS01 GDM 3.6.4.10 GO:0005524 ... P07900 9108479 PDBbind: -logKd/Ki=5.92, Kd=1.2uM
    BindingDB: IC50=42nM, Kd=714nM
    3275 1yfh:A (3.01) BS01 dna 2.1.1.63 GO:0003824 ... P16455 15964013 PDBbind: Kd=0.8uM
    3276 1yfh:A (3.01) BS02 dna 2.1.1.63 GO:0003824 ... P16455 15964013 PDBbind: Kd=0.8uM
    3277 1yfh:B (3.01) BS01 dna 2.1.1.63 GO:0003824 ... P16455 15964013 PDBbind: Kd=0.8uM
    3278 1yfh:B (3.01) BS02 dna 2.1.1.63 GO:0003824 ... P16455 15964013 PDBbind: Kd=0.8uM
    3279 1yfh:C (3.01) BS01 dna 2.1.1.63 GO:0003824 ... P16455 15964013 PDBbind: Kd=0.8uM
    3280 1yfh:C (3.01) BS02 dna 2.1.1.63 GO:0003824 ... P16455 15964013 PDBbind: Kd=0.8uM
    3281 1yfz:A (2.2) BS02 IMP 2.4.2.8 GO:0000166 ... Q8R7L0 15854655 MOAD: Ki=45uM
    PDBbind: -logKd/Ki=4.35, Ki=45uM
    3282 1yhm:A (2.5) BS03 AHD 2.5.1.10 GO:0004659 ... Q8WS26 16288456 MOAD: ic50=147uM
    PDBbind: -logKd/Ki=3.83, IC50=147uM
    3283 1yhs:A (2.15) BS01 STU 2.7.11.1 GO:0004672 ... P11309 15657054 MOAD: ic50=0.01uM
    PDBbind: -logKd/Ki=8.00, IC50=0.01uM
    3284 1yi3:A (2.5) BS01 LY2 2.7.11.1 GO:0004672 ... P11309 15657054 MOAD: ic50=4uM
    PDBbind: -logKd/Ki=5.40, IC50=4.0uM
    BindingDB: IC50=820nM
    3285 1yid:B (2.4) BS01 ATP 6.1.1.2 GO:0000166 ... Q9RVD6 15998643 MOAD: Kd=10uM
    PDBbind: -logKd/Ki=5.00, Kd=10uM
    3286 1yk7:A (2.5) BS01 NBL 3.4.22.38 GO:0006508 ... P43235 15780613 PDBbind: -logKd/Ki=7.72, IC50=19nM
    3287 1ykr:A (1.8) BS01 628 2.7.11.22 GO:0000082 ... P24941 15780638 MOAD: ic50=0.56uM
    PDBbind: -logKd/Ki=6.25, IC50=0.56uM
    BindingDB: IC50=560nM
    3288 1ylv:A (2.15) BS02 SHF 4.2.1.24 GO:0004655 ... P05373 10386874 PDBbind: -logKd/Ki=2.70, Ki=2.0mM
    3289 1yly:A (1.25) BS01 CB4 3.5.2.6 GO:0008800 ... Q9L5C7 15826180 PDBbind: -logKd/Ki=7.82, Ki=0.015uM
    3290 1ym1:A (1.12) BS01 SM2 3.5.2.6 GO:0008800 ... Q9L5C8 15826180 PDBbind: -logKd/Ki=6.24, Ki=0.578uM
    3291 1yms:A (1.6) BS01 NBF 3.5.2.6 GO:0008800 ... Q9L5C8 15826180 PDBbind: -logKd/Ki=5.92, Ki=1.2uM
    3292 1ynd:A (1.6) BS01 SFA 5.2.1.8 GO:0000413 ... P62937 15772070 MOAD: ic50=3.6nM
    PDBbind: -logKd/Ki=8.44, IC50=3.6nM
    BindingDB: IC50=1.000000nM, Kd=3.3nM
    3293 1yon:A (1.95) BS01 A2R 1.1.1.169 GO:0005737 ... P0A9J4 17242510 MOAD: Kd=61uM
    PDBbind: -logKd/Ki=4.21, Kd=61uM
    3294 1you:A (2.3) BS04 PFD 3.4.24.- GO:0004222 ... P45452 15780611 MOAD: ic50=0.87nM
    PDBbind: -logKd/Ki=9.06, IC50=0.87nM
    BindingDB: IC50=0.6nM
    3295 1yp9:A (2.1) BS02 UIZ 3.4.21.4 GO:0004175 ... P00760 16374786 MOAD: Ki=7700nM
    PDBbind: -logKd/Ki=5.11, Ki=7700nM
    3296 1ype:H (1.81) BS03 UIP 3.4.21.5 GO:0004252 ... P00734 16374786 MOAD: Ki=8nM
    PDBbind: -logKd/Ki=8.10, Ki=8nM
    3297 1ypg:H (1.8) BS03 UIR 3.4.21.5 GO:0004252 ... P00734 16374786 MOAD: Ki=10nM
    PDBbind: -logKd/Ki=8.00, Ki=10nM
    3298 1ypj:H (1.78) BS03 UIB 3.4.21.5 GO:0004252 ... P00734 16374786 MOAD: Ki=95nM
    PDBbind: -logKd/Ki=7.02, Ki=95nM
    3299 1yq7:A (2.2) BS03 RIS 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A PDBbind: -logKd/Ki=7.09, Ki=82.2nM
    BindingDB: IC50=11nM, Ki=82.2nM
    3300 1yqj:A (2.0) BS01 6NP 2.7.11.24 GO:0000077 ... Q16539 15837335 MOAD: Ki=7.3nM
    PDBbind: -logKd/Ki=8.14, Ki=7.3nM
    3301 1yqy:A (2.3) BS02 915 3.4.24.83 GO:0008237 ... P15917 15911756 MOAD: Ki=24nM
    PDBbind: -logKd/Ki=7.62, Ki=24nM
    BindingDB: Ki=24nM, IC50=54nM
    3302 1yrs:A (2.5) BS02 L47 ? GO:0003777 ... P52732 15808464 MOAD: ic50=450nM
    PDBbind: -logKd/Ki=6.35, IC50=450nM
    BindingDB: IC50=450nM
    3303 1ysg:A (-1.00) BS01 4FC ? GO:0042981 ... Q07817 15902208 PDBbind: -logKd/Ki=3.52, Kd=0.30mM
    BindingDB: Kd=300000nM, EC50=>31500nM, IC50=>99200nM
    3304 1ysi:A (-1.00) BS01 N3B ? GO:0042981 ... Q07817 15902208 PDBbind: -logKd/Ki=7.44, Ki=0.036uM
    BindingDB: IC50=>10000nM, Ki=36nM, Kd=1900nM
    3305 1yt7:A (2.3) BS01 3FC 3.4.22.38 GO:0006508 ... P43235 15982880 PDBbind: -logKd/Ki=9.89, IC50=0.13nM
    BindingDB: IC50=130nM
    3306 1yt9:A (3.0) BS01 OIS 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 15837308 PDBbind: -logKd/Ki=8.30, IC50=0.005uM
    3307 1yt9:B (3.0) BS01 OIS 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 15837308 PDBbind: -logKd/Ki=8.30, IC50=0.005uM
    3308 1ytf:A (2.5) BS01 dna ? GO:0003677 ... P13393 8610010 PDBbind: Kd=20pM
    3309 1ytf:A (2.5) BS02 dna ? GO:0003677 ... P13393 8610010 PDBbind: Kd=20pM
    3310 1ytf:C (2.5) BS01 dna ? GO:0005672 ... P32773 8610010 PDBbind: Kd=20pM
    3311 1ytu:A (2.5) BS01 rna ? GO:0003676 ... O28951 15800629 PDBbind: Kd=0.19uM
    3312 1ytu:A (2.5) BS02 rna ? GO:0003676 ... O28951 15800629 PDBbind: Kd=0.19uM
    3313 1ytu:B (2.5) BS01 rna ? GO:0003676 ... O28951 15800629 PDBbind: Kd=0.19uM
    3314 1ytu:B (2.5) BS02 rna ? GO:0003676 ... O28951 15800629 PDBbind: Kd=0.19uM
    3315 1yvf:A (2.5) BS01 PH7 3.4.21.98
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O93077 15863301 MOAD: ic50=0.1uM
    PDBbind: -logKd/Ki=7.00, IC50=0.10uM
    3316 1yvm:A (1.6) BS03 TMG 3.4.11.18 GO:0004177 ... P0AE18 15880695 MOAD: Ki=0.4uM
    PDBbind: -logKd/Ki=6.40, Ki=0.4uM
    BindingDB: IC50=472nM
    3317 1yvp:A (2.2) BS01 rna ? GO:0003723 ... P42700 15907467 PDBbind: Kd=5.2nM
    3318 1yvp:A (2.2) BS02 rna ? GO:0003723 ... P42700 15907467 PDBbind: Kd=5.2nM
    3319 1yvp:A (2.2) BS03 rna ? GO:0003723 ... P42700 15907467 PDBbind: Kd=5.2nM
    3320 1yvp:B (2.2) BS01 rna ? GO:0003723 ... P42700 15907467 PDBbind: Kd=5.2nM
    3321 1yvp:B (2.2) BS02 rna ? GO:0003723 ... P42700 15907467 PDBbind: Kd=5.2nM
    3322 1yvp:B (2.2) BS03 rna ? GO:0003723 ... P42700 15907467 PDBbind: Kd=5.2nM
    3323 1yvx:A (2.0) BS01 IPC 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26660 15746101 MOAD: ic50=8uM
    PDBbind: -logKd/Ki=5.10, IC50=8.0uM
    3324 1yvz:A (2.2) BS01 JPC 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26660 15746101 MOAD: ic50=4.4uM
    PDBbind: -logKd/Ki=5.36, IC50=4.4uM
    3325 1yw2:A (2.01) BS01 PGJ 2.7.11.24 GO:0000077 ... P47811 15837333 MOAD: ic50=141nM
    PDBbind: -logKd/Ki=6.85, IC50=141nM
    3326 1yw7:A (1.85) BS03 A41 3.4.11.18 GO:0006508 ... P50579 16789740 MOAD: ic50=1.4uM
    PDBbind: -logKd/Ki=5.85, IC50=1.4uM
    BindingDB: IC50=1400nM
    3327 1yw8:A (2.65) BS03 A75 3.4.11.18 GO:0006508 ... P50579 16789740 PDBbind: -logKd/Ki=8.00, IC50=10nM
    BindingDB: IC50=10nM
    3328 1ywr:A (1.95) BS01 LI9 2.7.11.24 GO:0000077 ... P47811 15837310 MOAD: ic50=32nM
    PDBbind: -logKd/Ki=7.89, IC50=13nM
    3329 1yxd:A (2.0) BS01 LYS 4.3.3.7 GO:0005737 ... P0A6L2 16041077 PDBbind: -logKd/Ki=5.30, Ki=5uM
    3330 1yxd:A (2.0) BS02 LYS 4.3.3.7 GO:0005737 ... P0A6L2 16041077 PDBbind: -logKd/Ki=5.30, Ki=5uM
    3331 1yxd:B (2.0) BS01 LYS 4.3.3.7 GO:0005737 ... P0A6L2 16041077 MOAD: Ki~22uM
    PDBbind: -logKd/Ki=5.30, Ki=5uM
    3332 1yxd:B (2.0) BS02 LYS 4.3.3.7 GO:0005737 ... P0A6L2 16041077 MOAD: Ki~22uM
    PDBbind: -logKd/Ki=5.30, Ki=5uM
    3333 1yy4:A (2.7) BS02 4NA ? N/A Q92731 15943471 PDBbind: -logKd/Ki=8.60, IC50=2.52nM
    BindingDB: IC50=2.52nM
    3334 1yye:A (2.03) BS02 196 ? N/A Q92731 15943471 MOAD: ic50=2.7nM
    PDBbind: -logKd/Ki=8.57, IC50=2.7nM
    BindingDB: IC50=2.7nM
    3335 1yyr:B (2.5) BS02 SAZ 4.2.3.6 GO:0016106 ... P13513 15835903 PDBbind: -logKd/Ki=6.29, Ki=0.51uM
    3336 1yys:A (2.75) BS01 SAZ 4.2.3.6 GO:0016106 ... P13513 15835903 PDBbind: -logKd/Ki=6.33, Ki=0.47uM
    3337 1yyy:1 (2.1) BS02 0KV 3.4.21.4 GO:0004175 ... P00760 9724521 PDBbind: -logKd/Ki=5.09, Ki=8100nM
    3338 1yz3:A (2.4) BS01 SKA 2.1.1.28 GO:0004603 ... P11086 16279783 MOAD: Ki=1.55nM
    PDBbind: -logKd/Ki=8.81, Ki=1.55nM
    BindingDB: Ki=3.1nM, IC50=10nM
    3339 1z1h:A (1.85) BS01 HBB 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 10387041 MOAD: Ki=4nM
    PDBbind: -logKd/Ki=8.40, Ki=4nM
    3340 1z1h:B (1.85) BS01 HBB 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 10387041 PDBbind: -logKd/Ki=8.40, Ki=4nM
    3341 1z1r:A (1.85) BS01 HBH 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 10387041 MOAD: Ki=0.6nM
    PDBbind: -logKd/Ki=9.22, Ki=0.6nM
    3342 1z1r:B (1.85) BS01 HBH 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 10387041 PDBbind: -logKd/Ki=9.22, Ki=0.6nM
    3343 1z2b:B (4.1) BS03 VLB ? GO:0000226 ... Q6B856 15917812 PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    BindingDB: Ki=>100000nM
    3344 1z2b:C (4.1) BS03 VLB 3.6.5.- GO:0000226 ... Q2HJ86 15917812 PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    3345 1z34:A (2.4) BS01 2FD N/A GO:0003824 ... N/A 15817485 MOAD: ic50=0.42mM
    PDBbind: -logKd/Ki=3.38, IC50=0.42mM
    3346 1z3c:A (2.2) BS01 SA8 2.1.1.56 GO:0003723 ... Q8SR66 15760890 MOAD: ic50=100uM
    PDBbind: -logKd/Ki=4.00, IC50=100uM
    3347 1z3j:A (-1.00) BS06 NGH 3.4.24.65 GO:0004222 ... P39900 15809432 PDBbind: -logKd/Ki=8.00, Kd=10nM
    BindingDB: Ki=4.3nM
    3348 1z4n:A (1.97) BS02 GL1 5.4.2.6 GO:0000287 ... P71447 15826149 MOAD: Ki=30uM
    PDBbind: -logKd/Ki=4.52, Ki=30uM
    3349 1z4o:A (1.9) BS02 GL1 5.4.2.6 GO:0000287 ... P71447 15826149 MOAD: Ki=30uM
    PDBbind: -logKd/Ki=4.52, Ki=30uM
    3350 1z4u:A (2.8) BS01 PH9 3.4.21.98
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... O93077 15911260 PDBbind: -logKd/Ki=7.15, IC50=0.07uM
    3351 1z5m:A (2.17) BS01 LI8 2.7.11.1 GO:0004672 ... O15530 15772071 MOAD: ic50=30nM
    PDBbind: -logKd/Ki=7.52, IC50=30nM
    BindingDB: IC50=39nM
    3352 1z63:A (3.0) BS01 dna ? GO:0005524 ... Q97XQ7 15882619 PDBbind: Kd=0.10uM
    3353 1z63:A (3.0) BS02 dna ? GO:0005524 ... Q97XQ7 15882619 PDBbind: Kd=0.10uM
    3354 1z63:B (3.0) BS01 dna ? GO:0005524 ... Q97XQ7 15882619 PDBbind: Kd=0.10uM
    3355 1z63:B (3.0) BS02 dna ? GO:0005524 ... Q97XQ7 15882619 PDBbind: Kd=0.10uM
    3356 1z6d:A (1.54) BS01 IMP 4.6.1.18 GO:0003676 ... P61823 16045769 MOAD: Ki=4.6mM
    PDBbind: -logKd/Ki=2.34, Ki=4.6mM
    3357 1z6d:A (1.54) BS02 IMP 4.6.1.18 GO:0003676 ... P61823 16045769 MOAD: Ki=4.6mM
    PDBbind: -logKd/Ki=2.34, Ki=4.6mM
    3358 1z6d:A (1.54) BS03 IMP 4.6.1.18 GO:0003676 ... P61823 16045769 MOAD: Ki=4.6mM
    PDBbind: -logKd/Ki=2.34, Ki=4.6mM
    3359 1z6e:A (1.8) BS01 IK8 3.4.21.6 GO:0004252 ... P00742 15771420 MOAD: Ki=0.19nM
    PDBbind: -logKd/Ki=9.72, Ki=0.19nM
    BindingDB: Ki=0.19nM
    3360 1z6f:A (1.6) BS01 BO9 3.4.16.4
    3.5.2.6    		 GO:0000270 ... P0AEB2 15938610 PDBbind: -logKd/Ki=4.89, Ki=13uM
    3361 1z6j:H (2.0) BS02 PY3 3.4.21.21 GO:0004252 ... P08709 15913999 MOAD: ic50=0.0094uM
    PDBbind: -logKd/Ki=8.03, IC50=0.0094uM
    BindingDB: IC50=9.4nM
    3362 1z6p:A (2.4) BS01 194 2.4.1.1 GO:0000166 ... P00489 15214781 MOAD: ic50=0.9uM
    PDBbind: -logKd/Ki=6.05, IC50=0.9uM
    3363 1z6q:A (2.03) BS01 195 2.4.1.1 GO:0000166 ... P00489 15214781 MOAD: ic50=74nM
    PDBbind: -logKd/Ki=6.70, IC50=0.2uM
    3364 1z6s:A (1.5) BS01 AMP 4.6.1.18 GO:0003676 ... P61823 16045769 MOAD: Ki=46uM
    PDBbind: -logKd/Ki=4.34, Ki=46uM
    3365 1z71:A (1.8) BS02 L17 3.4.21.5 GO:0004252 ... P00734 15911253 MOAD: Ki=0.66nM
    PDBbind: -logKd/Ki=9.18, Ki=0.66nM
    3366 1z95:A (1.8) BS01 198 ? N/A P10275 15833816 MOAD: Ki=76nM
    PDBbind: -logKd/Ki=7.12, Ki=76nM
    BindingDB: IC50=248nM, Ki=509nM
    3367 1z9c:A (2.64) BS01 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    3368 1z9c:A (2.64) BS02 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    3369 1z9c:B (2.64) BS01 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    3370 1z9c:B (2.64) BS02 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    3371 1z9c:C (2.64) BS01 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    3372 1z9c:C (2.64) BS02 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    3373 1z9c:D (2.64) BS01 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    3374 1z9c:D (2.64) BS02 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    3375 1z9c:E (2.64) BS01 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    3376 1z9c:E (2.64) BS02 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    3377 1z9c:F (2.64) BS01 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    3378 1z9c:F (2.64) BS02 dna ? GO:0000122 ... O34777 16209951 PDBbind: Kd=2.5nM
    3379 1z9g:E (1.7) BS06 RRT 3.4.24.27 GO:0004222 ... P00800 2719912 MOAD: Ki=2.3uM
    PDBbind: -logKd/Ki=5.64, Ki=2.3uM
    BindingDB: Ki=2300nM
    3380 1z9h:A (2.6) BS01 IMN 5.3.99.3 GO:0050220 ... Q9N0A4 15854652 PDBbind: -logKd/Ki=3.00, IC50=1mM
    3381 1z9y:A (1.66) BS02 FUN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A PDBbind: -logKd/Ki=7.19, Ki=65nM
    BindingDB: Ki=6.5e+4nM
    3382 1zaf:A (2.2) BS02 789 ? N/A Q92731 15876535 MOAD: ic50=20nM
    PDBbind: -logKd/Ki=7.70, IC50=20nM
    BindingDB: IC50=20nM
    3383 1zaj:A (1.89) BS01 M2P 4.1.2.13 GO:0004332 ... P00883 15870069 PDBbind: -logKd/Ki=5.10, IC50=8uM
    BindingDB: IC50=8000nM
    3384 1zc9:A (2.0) BS01 PMP 4.1.1.64 GO:0008453 ... P16932 16342932 MOAD: Kd=0.6mM
    PDBbind: -logKd/Ki=3.22, Kd=0.6mM
    3385 1zd2:P (3.0) BS02 NC3 3.1.3.76
    3.3.2.10    		 GO:0000287 ... P34913 16322563 PDBbind: -logKd/Ki=3.30, IC50>500uM
    BindingDB: IC50=>500000nM
    3386 1zd3:A (2.3) BS02 NC4 3.1.3.76
    3.3.2.10    		 GO:0000287 ... P34913 16322563 MOAD: ic50>500uM
    PDBbind: -logKd/Ki=3.30, IC50>500uM
    BindingDB: IC50=36000nM
    3387 1zd4:A (2.7) BS02 NC6 3.1.3.76
    3.3.2.10    		 GO:0000287 ... P34913 16322563 PDBbind: -logKd/Ki=3.60, IC50=253uM
    BindingDB: IC50=>100000nM
    3388 1zd5:A (2.6) BS02 NC7 3.1.3.76
    3.3.2.10    		 GO:0000287 ... P34913 16322563 PDBbind: -logKd/Ki=4.87, IC50=13.4uM
    3389 1zdp:E (1.7) BS06 TIO 3.4.24.27 GO:0004222 ... P00800 2719912 MOAD: Ki=1.8uM
    PDBbind: -logKd/Ki=5.74, Ki=1.8uM
    BindingDB: Ki=1800nM, IC50=9500nM
    3390 1ze8:A (2.0) BS03 PIU 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 16134940 MOAD: Ki=21nM
    PDBbind: -logKd/Ki=7.68, Ki=21nM
    BindingDB: Ki=21nM
    3391 1zeo:A (2.5) BS01 C01 ? GO:0003677 ... P37231 15974597 MOAD: ic50=0.21uM
    PDBbind: -logKd/Ki=6.68, IC50=0.21uM
    3392 1zfk:A (1.56) BS02 NR2 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A PDBbind: -logKd/Ki=7.92, Ki=12nM
    BindingDB: Ki=12nM
    3393 1zfk:A (1.56) BS03 NR2 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A PDBbind: -logKd/Ki=7.92, Ki=12nM
    BindingDB: Ki=12nM
    3394 1zfq:A (1.55) BS02 ZEC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A PDBbind: -logKd/Ki=7.52, Ki=30nM
    BindingDB: Ki=30nM, IC50=4nM
    3395 1zfq:A (1.55) BS03 ZEC 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A PDBbind: -logKd/Ki=7.52, Ki=30nM
    BindingDB: Ki=30nM, IC50=4nM
    3396 1zg1:A (2.3) BS01 dna ? GO:0003677 ... P0AF28 16262254 PDBbind: Kd=0.45uM
    3397 1zg1:A (2.3) BS02 dna ? GO:0003677 ... P0AF28 16262254 PDBbind: Kd=0.45uM
    3398 1zg1:B (2.3) BS01 dna ? GO:0003677 ... P0AF28 16262254 PDBbind: Kd=0.45uM
    3399 1zg1:B (2.3) BS02 dna ? GO:0003677 ... P0AF28 16262254 PDBbind: Kd=0.45uM
    3400 1zg1:E (2.3) BS01 dna ? GO:0003677 ... P0AF28 16262254 PDBbind: Kd=0.45uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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