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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 24809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3001 1w31:A (1.9) BS01 SHO 4.2.1.24 GO:0004655 ... P05373 16131755 MOAD: Ki=0.25mM
    PDBbind: -logKd/Ki=3.60, Ki=0.25mM
    3002 1w3j:A (2.0) BS01 OXZ 3.2.1.21 GO:0004553 ... Q08638 15356002 MOAD: Kd=484nM
    PDBbind: -logKd/Ki=6.32, Kd=484nM
    3003 1w3k:A (1.2) BS01 BGC 3.2.1.4 GO:0000272 ... O85465 15356002 PDBbind: -logKd/Ki=4.30, Ki=50uM
    3004 1w3k:A (1.2) BS02 OXZ 3.2.1.4 GO:0000272 ... O85465 15356002 PDBbind: -logKd/Ki=4.30, Ki=50uM
    3005 1w3l:A (1.04) BS01 BGC 3.2.1.4 GO:0000272 ... O85465 15356002 PDBbind: -logKd/Ki=6.28, Ki=0.52uM
    3006 1w3l:A (1.04) BS02 BGC 3.2.1.4 GO:0000272 ... O85465 15356002 PDBbind: -logKd/Ki=6.28, Ki=0.52uM
    3007 1w3l:A (1.04) BS03 OXZ 3.2.1.4 GO:0000272 ... O85465 15356002 PDBbind: -logKd/Ki=6.28, Ki=0.52uM
    3008 1w4l:A (2.16) BS01 GL8 3.1.1.7 GO:0001507 ... P04058 15563167 MOAD: ic50=4nM
    PDBbind: -logKd/Ki=8.40, IC50=4nM
    BindingDB: IC50=4nM
    3009 1w4o:A (1.6) BS01 UA3 4.6.1.18 GO:0003676 ... P61823 15670155 MOAD: Ki=3uM
    PDBbind: -logKd/Ki=5.22, Ki=6uM
    BindingDB: Ki=6000nM
    3010 1w4p:A (1.69) BS01 UM3 4.6.1.18 GO:0003676 ... P61823 15670155 MOAD: Ki=18uM
    PDBbind: -logKd/Ki=4.74, Ki=18uM
    3011 1w4q:A (1.68) BS01 UMF 4.6.1.18 GO:0003676 ... P61823 15670155 MOAD: Ki=5.5uM
    PDBbind: -logKd/Ki=5.26, Ki=5.5uM
    3012 1w51:A (2.55) BS01 L01 3.4.23.46 GO:0004190 ... P56817 15451669 PDBbind: -logKd/Ki=6.30, IC50=500nM
    BindingDB: IC50=500nM
    3013 1w5v:A (1.8) BS01 BE3 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 15560801 MOAD: Ki=7.1nM
    PDBbind: -logKd/Ki=8.15, Ki=7.1nM
    3014 1w5v:B (1.8) BS01 BE3 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 15560801 PDBbind: -logKd/Ki=8.15, Ki=7.1nM
    3015 1w5w:A (1.8) BS01 BE4 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 15560801 MOAD: Ki=1.6nM
    PDBbind: -logKd/Ki=8.80, Ki=1.6nM
    3016 1w5w:B (1.8) BS01 BE4 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 15560801 PDBbind: -logKd/Ki=8.80, Ki=1.6nM
    3017 1w5x:A (1.9) BS01 BE5 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 15560801 MOAD: Ki=4nM
    PDBbind: -logKd/Ki=8.40, Ki=4.0nM
    3018 1w5x:B (1.9) BS01 BE5 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 15560801 PDBbind: -logKd/Ki=8.40, Ki=4.0nM
    3019 1w5y:A (1.9) BS01 BE6 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 15560801 MOAD: Ki=3.3nM
    PDBbind: -logKd/Ki=8.48, Ki=3.3nM
    3020 1w5y:B (1.9) BS01 BE6 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03366 15560801 PDBbind: -logKd/Ki=8.48, Ki=3.3nM
    3021 1w6h:A (2.24) BS01 TIT 3.4.23.39 GO:0004190 ... P46925 N/A PDBbind: -logKd/Ki=9.30, Ki=0.5nM
    BindingDB: Ki=2.2nM
    3022 1w6j:A (2.2) BS01 R71 5.4.99.7 GO:0000250 ... P48449 15525992 PDBbind: -logKd/Ki=8.19, IC50=6.5nM
    BindingDB: IC50=6.5nM
    3023 1w6r:A (2.05) BS01 GNT 3.1.1.7 GO:0001507 ... P04058 15563167 MOAD: ic50=702nM
    PDBbind: -logKd/Ki=6.15, IC50=702nM
    BindingDB: IC50=1069nM, Ki=1.9e+2nM
    3024 1w6y:A (2.1) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 15819891 MOAD: Kd=4.4uM
    PDBbind: -logKd/Ki=5.36, Kd=4.4uM
    3025 1w76:A (2.3) BS01 GNT 3.1.1.7 GO:0001507 ... P04058 15563167 MOAD: ic50=702nM
    PDBbind: -logKd/Ki=6.15, IC50=702nM
    BindingDB: IC50=1069nM, Ki=1.9e+2nM
    3026 1w7a:A (2.27) BS01 dna ? GO:0000018 ... P23909 15297450 PDBbind: Kd=7.5uM
    3027 1w7a:A (2.27) BS02 dna ? GO:0000018 ... P23909 15297450 PDBbind: Kd=7.5uM
    3028 1w7a:B (2.27) BS01 dna ? GO:0000018 ... P23909 15297450 PDBbind: Kd=7.5uM
    3029 1w7g:H (1.65) BS03 MIU 3.4.21.5 GO:0004252 ... P00734 16294249 MOAD: Ki~13uM
    PDBbind: -logKd/Ki=5.10, Ki=8uM
    BindingDB: Ki=1900nM
    3030 1w7h:A (2.214) BS01 3IP 2.7.11.24 GO:0000077 ... Q16539 15658854 MOAD: ic50>1mM
    PDBbind: -logKd/Ki=3.00, IC50>1mM
    BindingDB: IC50=1300000nM
    3031 1w7x:H (1.8) BS02 413 3.4.21.21 GO:0004252 ... P08709 16213138 MOAD: Ki=0.004uM
    PDBbind: -logKd/Ki=8.40, Ki=0.004uM
    BindingDB: Ki=4nM
    3032 1w82:A (2.2) BS01 L10 2.7.11.24 GO:0000077 ... Q16539 15658855 MOAD: ic50=196nM
    PDBbind: -logKd/Ki=6.71, IC50=196nM
    3033 1w83:A (2.5) BS01 L11 2.7.11.24 GO:0000077 ... Q16539 15658855 MOAD: ic50=0.065uM
    PDBbind: -logKd/Ki=7.19, IC50=0.065uM
    3034 1w84:A (2.2) BS01 L12 2.7.11.24 GO:0000077 ... Q16539 15658855 MOAD: ic50=35uM
    PDBbind: -logKd/Ki=4.46, IC50=35uM
    BindingDB: IC50=35000nM
    3035 1w8l:A (1.8) BS01 1P3 5.2.1.8 GO:0000413 ... P62937 14993672 MOAD: Ki=320mM
    PDBbind: -logKd/Ki=0.49, Ki=320mM
    3036 1w8m:A (1.65) BS01 E1P 5.2.1.8 GO:0000413 ... P62937 14993672 MOAD: Ki=25mM
    PDBbind: -logKd/Ki=1.60, Ki=25mM
    3037 1w96:A (1.8) BS01 S1A 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 15610732 MOAD: Kd=3.9nM
    PDBbind: -logKd/Ki=8.41, Kd=3.9nM
    3038 1wax:A (2.2) BS02 LO1 3.1.3.48 GO:0004725 ... P18031 15658854 MOAD: ic50=86uM
    PDBbind: -logKd/Ki=4.07, IC50=86uM
    3039 1way:B (2.02) BS03 L02 3.4.21.5 GO:0004252 ... P00734 15658854 MOAD: ic50=400uM
    PDBbind: -logKd/Ki=3.40, IC50=400uM
    3040 1wb9:A (2.1) BS01 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=0.018uM
    3041 1wb9:A (2.1) BS02 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=0.018uM
    3042 1wb9:B (2.1) BS01 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=0.018uM
    3043 1wb9:B (2.1) BS02 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=0.018uM
    3044 1wbb:A (2.5) BS01 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=0.020uM
    3045 1wbb:A (2.5) BS02 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=0.020uM
    3046 1wbb:B (2.5) BS01 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=0.020uM
    3047 1wbb:B (2.5) BS02 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=0.020uM
    3048 1wbd:A (2.4) BS01 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=2.4nM
    3049 1wbd:A (2.4) BS02 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=2.4nM
    3050 1wbd:B (2.4) BS01 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=2.4nM
    3051 1wbd:B (2.4) BS02 dna ? GO:0000018 ... P23909 16407973 PDBbind: Kd=2.4nM
    3052 1wbg:B (2.2) BS02 L03 3.4.21.5 GO:0004252 ... P00734 15658854 MOAD: ic50=1mM
    PDBbind: -logKd/Ki=3.00, IC50=1mM
    3053 1wbn:A (2.4) BS01 L09 2.7.11.24 GO:0000077 ... Q16539 15658855 MOAD: ic50=0.35uM
    PDBbind: -logKd/Ki=6.46, IC50=0.35uM
    BindingDB: IC50=350nM
    3054 1wbo:A (2.16) BS01 2CH 2.7.11.24 GO:0000077 ... Q16539 15658854 MOAD: ic50>1mM
    PDBbind: -logKd/Ki=3.00, IC50>1mM
    3055 1wbs:A (1.8) BS01 LI2 2.7.11.24 GO:0000077 ... Q16539 15658855 MOAD: ic50=0.63uM
    PDBbind: -logKd/Ki=6.20, IC50=0.63uM
    BindingDB: IC50=630nM
    3056 1wbt:A (2.0) BS01 WBT 2.7.11.24 GO:0000077 ... Q16539 15658855 MOAD: ic50=0.34uM
    PDBbind: -logKd/Ki=6.47, IC50=0.34uM
    BindingDB: IC50=340nM
    3057 1wbv:A (2.0) BS01 LI3 2.7.11.24 GO:0000077 ... Q16539 15658855 MOAD: ic50=162uM
    PDBbind: -logKd/Ki=3.79, IC50=162uM
    BindingDB: IC50=162000nM
    3058 1wbw:A (2.41) BS01 LI4 2.7.11.24 GO:0000077 ... Q16539 15658855 MOAD: ic50=44uM
    PDBbind: -logKd/Ki=4.36, IC50=44uM
    BindingDB: IC50=44000nM
    3059 1wc1:A (1.93) BS01 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki~0.1mM
    PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    3060 1wc1:B (1.93) BS01 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki~0.1mM
    PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    3061 1wc1:B (1.93) BS04 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 MOAD: Ki~0.1mM
    PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    3062 1wc6:A (2.51) BS01 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    3063 1wc6:A (2.51) BS03 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    3064 1wc6:C (2.51) BS01 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    3065 1wc6:C (2.51) BS02 TAT 2.7.13.3 GO:0009190 ... O32393 15619637 PDBbind: -logKd/Ki=4.00, Ki=0.1mM
    3066 1wcc:A (2.2) BS01 CIG 2.7.11.22 GO:0000082 ... P24941 15658854 MOAD: ic50=350uM
    PDBbind: -logKd/Ki=3.46, IC50=350uM
    BindingDB: IC50=350000nM
    3067 1wcq:A (2.1) BS01 DAN 3.2.1.18 GO:0004308 ... Q02834 16206228 MOAD: Ki=0.55uM
    PDBbind: -logKd/Ki=6.26, Ki=0.55uM
    3068 1wdn:A (1.94) BS01 GLN ? GO:0006865 ... P0AEQ3 9571045 MOAD: Kd=0.5uM
    PDBbind: -logKd/Ki=6.30, Kd=0.5uM
    3069 1wdy:A (1.8) BS01 25A 3.1.26.- N/A Q05823 15385955 PDBbind: -logKd/Ki=7.89, IC50=13nM
    BindingDB: IC50=20nM, EC50=0.210000nM
    3070 1we2:A (2.3) BS02 DHK 2.7.1.71 GO:0000287 ... P9WPY3 15583379 PDBbind: -logKd/Ki=4.36, Kd=44uM
    3071 1wet:A (2.6) BS01 dna ? GO:0000976 ... P0ACP7 9278422 PDBbind: Kd=1.5uM
    3072 1wht:A (2.0) BS01 BZS 3.4.16.6 GO:0004185 ... P08819 7727364 MOAD: Ki=0.2mM
    PDBbind: -logKd/Ki=3.70, Ki=0.2mM
    3073 1wht:B (2.0) BS01 BZS 3.4.16.6 GO:0004185 ... P08819 7727364 PDBbind: -logKd/Ki=3.70, Ki=0.2mM
    3074 1wkm:A (2.3) BS03 MET 3.4.11.18 GO:0004177 ... P56218 15628852 MOAD: Ki=150mM
    PDBbind: -logKd/Ki=0.82, Ki=150mM
    3075 1wm1:A (2.1) BS01 PTB 3.4.11.5 GO:0004177 ... O32449 12893291 MOAD: Ki=0.5uM
    PDBbind: -logKd/Ki=6.30, Ki=0.5uM
    BindingDB: Ki=500nM
    3076 1wn6:A (1.8) BS02 BST 3.5.4.23 GO:0003824 ... P0C2P0 17959604 PDBbind: -logKd/Ki=4.68, Ki=21uM
    3077 1wn6:B (1.8) BS02 BST 3.5.4.23 GO:0003824 ... P0C2P0 17959604 PDBbind: -logKd/Ki=4.68, Ki=21uM
    3078 1wok:A (3.0) BS01 CNQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 15733846 PDBbind: -logKd/Ki=7.48, IC50=33nM
    BindingDB: IC50=33nM
    3079 1wqv:H (2.5) BS02 PSM 3.4.21.21 GO:0004252 ... P08709 15504346 MOAD: ic50=130nM
    PDBbind: -logKd/Ki=6.89, IC50=130nM
    3080 1ws1:A (2.0) BS01 BB2 3.5.1.88 GO:0006412 ... Q819U0 16049914 MOAD: Ki=0.28nM
    PDBbind: -logKd/Ki=9.55, Ki=0.28nM
    3081 1ws4:A (1.9) BS04 GYP ? GO:0005575 ... P18670 15733927 MOAD: Kd=1mM
    PDBbind: -logKd/Ki=3.00, Kd=1.00mM
    3082 1wss:H (2.6) BS02 3CB 3.4.21.21 GO:0004252 ... P08709 16510984 PDBbind: -logKd/Ki=7.77, IC50=17nM
    3083 1wsu:A (2.3) BS01 rna ? GO:0001514 ... Q46455 15665870 PDBbind: Kd=0.2nM
    3084 1wsu:B (2.3) BS01 rna ? GO:0001514 ... Q46455 15665870 PDBbind: Kd=0.2nM
    3085 1wsu:C (2.3) BS01 rna ? GO:0001514 ... Q46455 15665870 PDBbind: Kd=0.2nM
    3086 1wtg:H (2.2) BS02 3BP 3.4.21.21 GO:0004252 ... P08709 15607748 MOAD: ic50=93nM
    PDBbind: -logKd/Ki=7.03, IC50=93nM
    BindingDB: IC50=93nM
    3087 1wu1:A (2.3) BS03 D91 3.4.21.6 GO:0004252 ... P00742 15911309 MOAD: ic50=18nM
    PDBbind: -logKd/Ki=7.74, IC50=18nM
    3088 1wug:A (-1.00) BS01 NP1 2.3.1.48
    2.3.1.57    		 GO:0004402 ... Q92831 15724976 PDBbind: -logKd/Ki=5.80, IC50=1.6uM
    BindingDB: IC50=1600nM
    3089 1wum:A (-1.00) BS01 NP2 2.3.1.48
    2.3.1.57    		 GO:0004402 ... Q92831 15724976 PDBbind: -logKd/Ki=5.29, IC50=5.1uM
    3090 1wun:H (2.4) BS02 P5B 3.4.21.21 GO:0004252 ... P08709 15629154 MOAD: ic50=62nM
    PDBbind: -logKd/Ki=7.21, IC50=62nM
    3091 1wuq:A (2.0) BS02 8GT 3.5.4.16 GO:0003934 ... Q5SH52 16169877 PDBbind: -logKd/Ki=8.27, Ki=0.0054uM
    3092 1wuq:A (2.0) BS03 8GT 3.5.4.16 GO:0003934 ... Q5SH52 16169877 PDBbind: -logKd/Ki=8.27, Ki=0.0054uM
    3093 1wuq:B (2.0) BS01 8GT 3.5.4.16 GO:0003934 ... Q5SH52 16169877 PDBbind: -logKd/Ki=8.27, Ki=0.0054uM
    3094 1wuq:B (2.0) BS03 8GT 3.5.4.16 GO:0003934 ... Q5SH52 16169877 PDBbind: -logKd/Ki=8.27, Ki=0.0054uM
    3095 1wur:A (1.82) BS02 8DG 3.5.4.16 GO:0003934 ... Q5SH52 16169877 PDBbind: -logKd/Ki=6.66, Ki=0.22uM
    3096 1wur:A (1.82) BS03 8DG 3.5.4.16 GO:0003934 ... Q5SH52 16169877 PDBbind: -logKd/Ki=6.66, Ki=0.22uM
    3097 1wur:B (1.82) BS01 8DG 3.5.4.16 GO:0003934 ... Q5SH52 16169877 PDBbind: -logKd/Ki=6.66, Ki=0.22uM
    3098 1wur:B (1.82) BS03 8DG 3.5.4.16 GO:0003934 ... Q5SH52 16169877 PDBbind: -logKd/Ki=6.66, Ki=0.22uM
    3099 1wv7:H (2.7) BS02 5PI 3.4.21.21 GO:0004252 ... P08709 15629154 PDBbind: -logKd/Ki=7.26, IC50=55nM
    3100 1wva:A (1.94) BS03 S2C 3.5.3.1 GO:0000050 ... P05089 16141327 MOAD: Kd=270nM
    PDBbind: -logKd/Ki=6.57, Kd=270nM
    3101 1wvc:A (2.5) BS02 CTP 2.7.7.33 GO:0000166 ... Q8Z5I4 15634670 PDBbind: -logKd/Ki=4.46, Ki=35uM
    3102 1wvj:A (1.75) BS01 IBC ? GO:0015276 ... P19491 15794751 MOAD: Ki=185nM
    PDBbind: -logKd/Ki=6.73, Ki=185nM
    3103 1wwd:A (-1.00) BS01 rna ? GO:0003676 ... P03332 15751950 PDBbind: Kd=250nM
    3104 1wwe:A (-1.00) BS01 rna ? GO:0003676 ... P03332 15751950 PDBbind: Kd=170nM
    3105 1wwf:A (-1.00) BS01 rna ? GO:0003676 ... P03332 15751950 PDBbind: Kd=94nM
    3106 1wwg:A (-1.00) BS01 rna ? GO:0003676 ... P03332 15751950 PDBbind: Kd=95nM
    3107 1wxz:A (2.8) BS02 FRL 3.5.4.4 GO:0004000 ... P56658 16033254 PDBbind: -logKd/Ki=8.07, IC50=8.6nM
    3108 1wzy:A (2.5) BS01 F29 2.7.11.24 GO:0000165 ... P28482 16242327 MOAD: ic50=0.56uM
    PDBbind: -logKd/Ki=6.25, IC50=0.56uM
    BindingDB: IC50=560nM
    3109 1x07:A (2.2) BS02 IPE 2.5.1.31 GO:0000287 ... P60472 15788389 MOAD: Kd=520uM
    PDBbind: -logKd/Ki=3.28, Kd=520uM
    3110 1x0n:A (-1.00) BS01 DTF ? N/A P62993 N/A PDBbind: -logKd/Ki=7.70, IC50=20nM
    BindingDB: IC50=20nM
    3111 1x1z:A (1.45) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 16248642 MOAD: Ki=8.8pM
    PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    3112 1x1z:A (1.45) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 16248642 MOAD: Ki=8.8pM
    PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    3113 1x1z:B (1.45) BS01 BMP 4.1.1.23 GO:0004590 ... O26232 16248642 PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    3114 1x1z:B (1.45) BS02 BMP 4.1.1.23 GO:0004590 ... O26232 16248642 PDBbind: -logKd/Ki=11.06, Ki=8.8pM
    3115 1x38:A (1.698) BS02 IDD 3.2.1.21 GO:0004553 ... Q9XEI3 16342944 MOAD: Ki=1.7nM
    PDBbind: -logKd/Ki=8.77, Ki=1.7nM
    3116 1x39:A (1.8) BS02 IDE 3.2.1.21 GO:0004553 ... Q9XEI3 16342944 MOAD: Ki=0.6nM
    PDBbind: -logKd/Ki=9.22, Ki=0.6nM
    3117 1x6u:A (2.7) BS01 DO8 2.5.1.55 GO:0005737 ... P0A715 16023668 PDBbind: -logKd/Ki=3.22, Ki=0.6mM
    3118 1x70:A (2.1) BS01 715 3.4.14.5 GO:0001618 ... P27487 15634008 MOAD: ic50=18nM
    PDBbind: -logKd/Ki=7.74, IC50=18nM
    BindingDB: IC50=18nM, Kd=1.3nM
    3119 1x76:A (2.2) BS02 697 ? GO:0003677 ... Q92731 15548008 MOAD: ic50=1.9nM
    PDBbind: -logKd/Ki=8.72, IC50=1.9nM
    BindingDB: IC50=2.2nM
    3120 1x78:A (2.3) BS02 244 ? GO:0003677 ... Q92731 15548008 MOAD: ic50=14nM
    PDBbind: -logKd/Ki=7.85, IC50=14.0nM
    BindingDB: IC50=14nM
    3121 1x7a:C (2.9) BS01 187 3.4.21.22 GO:0004252 ... P16293 15454208 PDBbind: -logKd/Ki=7.89, Ki=13nM
    3122 1x7b:A (2.3) BS02 041 ? GO:0003677 ... Q92731 15548008 MOAD: ic50=4.1nM
    PDBbind: -logKd/Ki=8.39, IC50=4.1nM
    BindingDB: IC50=5nM
    3123 1x7e:A (2.8) BS02 244 ? N/A P03372 15548008 PDBbind: -logKd/Ki=5.97, IC50=1062.5nM
    BindingDB: IC50=1152nM
    3124 1x7r:A (2.0) BS02 GEN ? N/A P03372 15576033 MOAD: ic50=360nM
    PDBbind: -logKd/Ki=8.05, IC50=9nM
    BindingDB: IC50=395nM, EC50=240nM, Ki=370nM
    3125 1x81:B (3.5) BS02 JAN 2.5.1.58 GO:0003824 ... Q02293 15454228 PDBbind: -logKd/Ki=9.19, IC50=0.65nM
    3126 1x8b:A (1.81) BS03 824 2.7.10.2 GO:0004672 ... P30291 15837193 MOAD: ic50=97nM
    PDBbind: -logKd/Ki=7.01, IC50=97nM
    BindingDB: IC50=97nM
    3127 1x8d:A (1.8) BS01 RNS 5.1.3.32 GO:0005737 ... P32156 15876375 MOAD: Kd=6.16mM
    PDBbind: -logKd/Ki=2.21, Kd=6.16mM
    3128 1x8d:B (1.8) BS01 RNS 5.1.3.32 GO:0005737 ... P32156 15876375 MOAD: Kd=6.16mM
    PDBbind: -logKd/Ki=2.21, Kd=6.16mM
    3129 1x8j:A (2.35) BS03 AOI ? GO:0005737 ... Q26490 15608121 MOAD: Ki=0.11uM
    PDBbind: -logKd/Ki=6.96, Ki=0.11uM
    3130 1x8r:A (1.5) BS01 SC1 2.5.1.19 GO:0003824 ... P0A6D3 15736934 MOAD: Ki=2.9uM
    PDBbind: -logKd/Ki=6.12, Ki=750nM
    BindingDB: Kd=15nM, Ki=15nM
    3131 1x8t:A (1.9) BS01 RC1 2.5.1.19 GO:0003824 ... P0A6D3 15736934 MOAD: Ki=16nM
    PDBbind: -logKd/Ki=7.80, Ki=16nM
    3132 1xa5:A (2.12) BS05 KAR ? GO:0000922 ... P62157 15596444 MOAD: Kd=316nM
    PDBbind: -logKd/Ki=6.50, Kd=316nM
    3133 1xap:A (2.1) BS01 TTB ? GO:0003677 ... P10826 15319780 MOAD: Kd=2.5nM
    PDBbind: -logKd/Ki=8.70, Kd=2nM
    BindingDB: EC50=4nM, Ki=0.500000nM, Kd=5nM, IC50=5nM
    3134 1xbb:A (1.57) BS01 STI 2.7.10.2 GO:0004672 ... P43405 15507431 MOAD: Ki=5uM
    PDBbind: -logKd/Ki=5.30, Ki=5.0uM
    BindingDB: Ki=5000nM, Kd=>10000nM, IC50=>10000nM
    3135 1xbc:A (2.0) BS01 STU 2.7.10.2 GO:0004672 ... P43405 15507431 MOAD: ic50=0.012uM
    PDBbind: -logKd/Ki=7.92, IC50=0.012uM
    3136 1xbo:A (2.5) BS01 IX1 3.1.3.48 GO:0004725 ... P18031 15482920 MOAD: Ki=0.92uM
    PDBbind: -logKd/Ki=6.04, Ki=0.92uM
    BindingDB: IC50=920nM
    3137 1xc8:A (1.95) BS01 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P42371 15249553 PDBbind: Kd=2.6nM
    3138 1xc8:A (1.95) BS02 dna 3.2.2.23
    4.2.99.18    		 GO:0003676 ... P42371 15249553 PDBbind: Kd=2.6nM
    3139 1xd0:A (2.0) BS01 ARE 3.2.1.1 GO:0003824 ... P04746 15736945 MOAD: Ki=0.075uM
    PDBbind: -logKd/Ki=7.12, Ki=0.075uM
    3140 1xdd:A (2.2) BS02 AAY ? N/A P20701 15304496 MOAD: ic50=0.2uM
    PDBbind: -logKd/Ki=6.70, IC50=0.2uM
    3141 1xdd:A (2.2) BS03 AAY ? N/A P20701 15304496 MOAD: ic50=0.2uM
    PDBbind: -logKd/Ki=6.70, IC50=0.2uM
    3142 1xdg:A (2.1) BS02 AB8 ? N/A P20701 15304496 MOAD: ic50=0.05uM
    PDBbind: -logKd/Ki=7.30, IC50=0.05uM
    BindingDB: IC50=50nM
    3143 1xdg:A (2.1) BS03 AB8 ? N/A P20701 15304496 MOAD: ic50=0.05uM
    PDBbind: -logKd/Ki=7.30, IC50=0.05uM
    BindingDB: IC50=50nM
    3144 1xff:A (1.8) BS01 GLU 2.6.1.16 N/A P17169 8805567 MOAD: Ki=15uM
    PDBbind: -logKd/Ki=4.82, Ki=15uM
    3145 1xfv:A (3.35) BS02 3AT 4.6.1.1 GO:0003824 ... P40136 15719022 PDBbind: -logKd/Ki=3.89, Kd=130uM
    3146 1xge:A (1.9) BS03 DOR 3.5.2.3 GO:0004151 ... P05020 15826651 MOAD: Kd=20.8uM
    PDBbind: -logKd/Ki=4.68, Kd=20.8uM
    3147 1xgi:B (1.96) BS01 NST 3.5.2.6 GO:0008800 ... P00811 15796528 MOAD: Ki=14uM
    PDBbind: -logKd/Ki=4.85, Ki=14uM
    3148 1xgj:A (1.97) BS01 HTC 3.5.2.6 GO:0008800 ... P00811 15796528 MOAD: Ki=1uM
    PDBbind: -logKd/Ki=6.00, Ki=1.0uM
    BindingDB: Ki=1000nM
    3149 1xh4:A (2.45) BS02 R69 2.7.11.11 GO:0001669 ... P00517 15634010 MOAD: Kd=34nM
    PDBbind: -logKd/Ki=7.47, Kd=34nM
    BindingDB: IC50=30nM
    3150 1xh5:A (2.05) BS02 R68 2.7.11.11 GO:0001669 ... P00517 15634010 MOAD: Kd=3400nM
    PDBbind: -logKd/Ki=5.47, Kd=3400nM
    3151 1xh6:A (1.9) BS02 R94 2.7.11.11 GO:0001669 ... P00517 15634010 MOAD: Kd=48nM
    PDBbind: -logKd/Ki=7.32, Kd=48nM
    BindingDB: IC50=400nM
    3152 1xh7:A (2.47) BS02 R96 2.7.11.11 GO:0001669 ... P00517 15634010 MOAD: Kd=150nM
    PDBbind: -logKd/Ki=6.82, Kd=150nM
    BindingDB: IC50=1900nM
    3153 1xh8:A (1.6) BS02 R55 2.7.11.11 GO:0001669 ... P00517 15634010 MOAD: ic50=1700nM
    PDBbind: -logKd/Ki=5.77, IC50=1700nM
    BindingDB: IC50=1700nM
    3154 1xh9:A (1.64) BS02 R69 2.7.11.11 GO:0001669 ... P00517 15634010 MOAD: Kd=17nM
    PDBbind: -logKd/Ki=7.77, Kd=17nM
    BindingDB: IC50=30nM
    3155 1xhy:A (1.85) BS01 KAI ? GO:0015276 ... P19491 15591246 MOAD: Ki=624nM
    PDBbind: -logKd/Ki=6.18, Ki=662nM
    BindingDB: EC50=380000nM, Ki=3690nM
    3156 1xjd:A (2.0) BS01 STU 2.7.11.13 GO:0004672 ... Q04759 15364937 MOAD: Ki=0.33nM
    PDBbind: -logKd/Ki=9.48, Ki=0.33nM
    3157 1xjv:A (1.73) BS01 dna ? GO:0000723 ... Q9NUX5 15558049 PDBbind: Kd=9.2nM
    3158 1xk5:A (2.4) BS01 TPG ? GO:0005634 ... O95149 15920472 MOAD: Kd=1uM
    PDBbind: -logKd/Ki=6.00, Kd=1.0uM
    3159 1xk9:A (2.1) BS01 P34 2.4.2.36 GO:0047286 ... P11439 15458385 MOAD: Ki=140nM
    PDBbind: -logKd/Ki=6.85, Ki=140nM
    3160 1xka:C (2.3) BS02 4PP 3.4.21.6 GO:0004252 ... P00742 9618463 MOAD: Ki=131nM
    PDBbind: -logKd/Ki=6.88, Ki=131nM
    BindingDB: IC50=270nM
    3161 1xkk:A (2.4) BS01 FMM 2.7.10.1 GO:0004672 ... P00533 15374980 MOAD: Ki=3nM
    PDBbind: -logKd/Ki=8.52, Ki=3nM
    BindingDB: IC50=11nM, Kd=1.2nM, Ki=3.0nM
    3162 1xlx:A (2.19) BS02 CIO 3.1.4.53 GO:0004114 ... Q07343 15576036 MOAD: ic50=0.025uM
    PDBbind: -logKd/Ki=7.60, IC50=0.025uM
    BindingDB: IC50=100nM, Ki=38nM
    3163 1xlz:A (2.06) BS02 FIL 3.1.4.53 GO:0004114 ... Q07343 15576036 MOAD: ic50=0.96uM
    PDBbind: -logKd/Ki=6.02, IC50=0.96uM
    3164 1xm4:A (2.31) BS02 PIL 3.1.4.53 GO:0004114 ... Q07343 15576036 MOAD: ic50=0.041nM
    PDBbind: -logKd/Ki=10.39, IC50=0.041nM
    BindingDB: IC50=1nM, Ki=1.5nM
    3165 1xm6:A (1.92) BS02 5RM 3.1.4.53 GO:0004114 ... Q07343 15576036 MOAD: ic50=0.42uM
    PDBbind: -logKd/Ki=6.38, IC50=0.42uM
    BindingDB: IC50=420nM
    3166 1xmu:A (2.3) BS02 ROF 3.1.4.53 GO:0004114 ... Q07343 15576036 MOAD: ic50=0.84nM
    PDBbind: -logKd/Ki=9.08, IC50=0.84nM
    BindingDB: IC50=0.398nM, Ki=0.398107nM
    3167 1xmy:A (2.4) BS02 ROL 3.1.4.53 GO:0004114 ... Q07343 15576036 MOAD: ic50=0.57uM
    PDBbind: -logKd/Ki=7.30, IC50=50.12nM
    3168 1xn0:A (2.31) BS02 ROL 3.1.4.53 GO:0004114 ... Q07343 15576036 MOAD: ic50=0.57uM
    PDBbind: -logKd/Ki=6.24, IC50=0.57uM
    3169 1xn0:A (2.31) BS03 ROL 3.1.4.53 GO:0004114 ... Q07343 15576036 MOAD: ic50=0.57uM
    PDBbind: -logKd/Ki=6.24, IC50=0.57uM
    3170 1xns:A (2.8) BS01 dna ? GO:0003677 ... P06956 15591069 PDBbind: Kd=1.3uM
    3171 1xns:A (2.8) BS02 dna ? GO:0003677 ... P06956 15591069 PDBbind: Kd=1.3uM
    3172 1xns:B (2.8) BS01 dna ? GO:0003677 ... P06956 15591069 PDBbind: Kd=1.3uM
    3173 1xns:B (2.8) BS02 dna ? GO:0003677 ... P06956 15591069 PDBbind: Kd=1.3uM
    3174 1xnx:A (2.9) BS01 ATE ? GO:0003677 ... O35627 15610734 PDBbind: -logKd/Ki=6.38, Ki=416nM
    BindingDB: IC50=250nM
    3175 1xnz:A (1.52) BS03 FCD 3.4.11.18 GO:0004177 ... P0AE18 15506752 MOAD: ic50=0.24uM
    PDBbind: -logKd/Ki=6.62, IC50=0.24uM
    BindingDB: IC50=116000nM
    3176 1xo2:B (2.9) BS01 FSE 2.7.11.22 GO:0000082 ... Q00534 15689157 PDBbind: -logKd/Ki=6.07, IC50=0.85uM
    BindingDB: IC50=850nM
    3177 1xoe:A (2.2) BS01 ABX 3.2.1.18 GO:0004308 ... P03472 15582424 MOAD: ic50=41nM
    PDBbind: -logKd/Ki=7.39, IC50=41nM
    3178 1xog:A (2.8) BS01 ABW 3.2.1.18 GO:0004308 ... P03472 15582424 PDBbind: -logKd/Ki=6.39, IC50=410nM
    3179 1xom:A (1.55) BS02 CIO 3.1.4.53 GO:0004114 ... Q08499 15576036 MOAD: ic50=0.011uM
    PDBbind: -logKd/Ki=7.96, IC50=0.011uM
    BindingDB: IC50=11nM
    3180 1xon:A (1.72) BS02 PIL 3.1.4.53 GO:0004114 ... Q08499 15576036 MOAD: ic50=0.021nM
    PDBbind: -logKd/Ki=10.68, IC50=0.021nM
    BindingDB: IC50=21nM
    3181 1xoq:A (1.83) BS02 ROF 3.1.4.53 GO:0004114 ... Q08499 15576036 MOAD: ic50=0.68nM
    PDBbind: -logKd/Ki=9.17, IC50=0.68nM
    BindingDB: IC50=0.400000nM
    3182 1xor:A (1.54) BS02 ZAR 3.1.4.53 GO:0004114 ... Q08499 15576036 MOAD: ic50=0.39uM
    PDBbind: -logKd/Ki=6.41, IC50=0.39uM
    BindingDB: IC50=390nM
    3183 1xos:A (2.28) BS02 VIA 3.1.4.53 GO:0004114 ... Q07343 15576036 MOAD: ic50=20uM
    PDBbind: -logKd/Ki=4.70, IC50=20uM
    BindingDB: IC50=20000nM
    3184 1xow:A (1.8) BS02 R18 ? N/A P10275 15525515 PDBbind: -logKd/Ki=9.28, Kd=0.52nM
    BindingDB: Kd=0.99nM, IC50=0.302000nM, EC50=0.013000nM, Ki=0.400000nM
    3185 1xoz:A (1.37) BS02 CIA 3.1.4.35 GO:0004114 ... O76074 15576036 MOAD: ic50=0.0012uM
    PDBbind: -logKd/Ki=8.92, IC50=1.2nM
    BindingDB: IC50=4nM, Ki=10nM
    3186 1xp0:A (1.79) BS02 VDN 3.1.4.35 GO:0004114 ... O76074 15576036 MOAD: ic50=0.001uM
    PDBbind: -logKd/Ki=9.00, IC50=1.0nM
    BindingDB: IC50=0.890000nM, Ki=1nM
    3187 1xp1:A (1.8) BS01 AIH ? N/A P03372 15582421 MOAD: ic50=0.5nM
    PDBbind: -logKd/Ki=9.30, IC50=0.5nM
    BindingDB: IC50=0.5nM
    3188 1xp6:A (1.7) BS01 AIU ? N/A P03372 15582421 MOAD: ic50=0.4nM
    PDBbind: -logKd/Ki=9.40, IC50=0.4nM
    BindingDB: IC50=0.4nM
    3189 1xp9:A (1.8) BS01 AIJ ? N/A P03372 15582421 MOAD: ic50=1.3nM
    PDBbind: -logKd/Ki=8.89, IC50=1.3nM
    BindingDB: IC50=1.3nM
    3190 1xpc:A (1.6) BS01 AIT ? N/A P03372 15582421 MOAD: ic50=1.7nM
    PDBbind: -logKd/Ki=8.77, IC50=1.7nM
    BindingDB: IC50=1.7nM
    3191 1xpz:A (2.02) BS02 4TZ 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 15865431 MOAD: Kd=84nM
    PDBbind: -logKd/Ki=7.08, Kd=84nM
    BindingDB: IC50=27nM
    3192 1xq0:A (1.76) BS02 4TR 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 15865431 MOAD: Kd=454nM
    PDBbind: -logKd/Ki=6.34, Kd=454nM
    BindingDB: IC50=137nM
    3193 1xqc:A (2.05) BS01 AEJ ? N/A P03372 15658851 MOAD: ic50=63nM
    PDBbind: -logKd/Ki=7.20, IC50=63nM
    BindingDB: EC50=23.2nM, IC50=63nM
    3194 1xs7:D (2.8) BS01 MMI 3.4.23.46 GO:0004190 ... P56817 15582402 PDBbind: -logKd/Ki=7.60, Ki=25.1nM
    BindingDB: Ki=25nM
    3195 1xsc:A (-1.00) BS01 ATP 3.6.1.17 GO:0004081 ... P50583 15596429 PDBbind: -logKd/Ki=4.30, Kd=0.05mM
    3196 1xt3:A (2.4) BS01 IDS ? GO:0005576 ... P60301 15590643 PDBbind: -logKd/Ki=5.70, Kd=2.01uM
    3197 1xt8:A (2.0) BS01 CYS ? N/A Q0P9S0 15948956 MOAD: Kd=0.14uM
    PDBbind: -logKd/Ki=6.85, Kd=0.14uM
    3198 1xuc:A (1.7) BS05 PB3 3.4.24.- GO:0004222 ... P45452 15734645 MOAD: ic50=72nM
    PDBbind: -logKd/Ki=7.14, IC50=72nM
    BindingDB: IC50=72nM
    3199 1xud:A (1.8) BS05 PB4 3.4.24.- GO:0004222 ... P45452 15734640 MOAD: ic50=8nM
    PDBbind: -logKd/Ki=8.10, IC50=8nM
    BindingDB: IC50=8nM
    3200 1xug:A (1.5) BS03 BAB 3.4.21.4 GO:0004175 ... P00760 9468142 MOAD: Ki=0.09uM
    PDBbind: -logKd/Ki=7.05, Ki=0.09uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218